Experiment: Bas10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_05640 and JDDGAC_05645 are separated by 1 nucleotides JDDGAC_05645 and gpG are separated by 40 nucleotides gpG and JDDGAC_05655 are separated by 176 nucleotides
JDDGAC_05640: JDDGAC_05640 - phage head morphogenesis protein, at 983,883 to 985,214
_05640
JDDGAC_05645: JDDGAC_05645 - tRNA-Xxx, at 985,216 to 985,295
_05645
JDDGAC_05650: gpG - phage virion morphogenesis protein, at 985,336 to 985,809
gpG
JDDGAC_05655: JDDGAC_05655 - protease, at 985,986 to 987,110
_05655
Position (kb) 985
986 Strain fitness (log2 ratio) -2
-1
0
1
2 at 984.231 kb on + strand, within JDDGAC_05640 at 984.374 kb on - strand, within JDDGAC_05640 at 984.381 kb on + strand, within JDDGAC_05640 at 984.401 kb on + strand, within JDDGAC_05640 at 984.408 kb on + strand, within JDDGAC_05640 at 984.579 kb on + strand, within JDDGAC_05640 at 984.624 kb on + strand, within JDDGAC_05640 at 984.624 kb on + strand, within JDDGAC_05640 at 984.624 kb on + strand, within JDDGAC_05640 at 984.626 kb on + strand, within JDDGAC_05640 at 984.627 kb on - strand, within JDDGAC_05640 at 985.035 kb on + strand, within JDDGAC_05640 at 985.035 kb on + strand, within JDDGAC_05640 at 985.035 kb on + strand, within JDDGAC_05640 at 985.036 kb on - strand, within JDDGAC_05640 at 985.037 kb on + strand, within JDDGAC_05640 at 985.038 kb on - strand, within JDDGAC_05640 at 985.038 kb on - strand, within JDDGAC_05640 at 985.086 kb on + strand at 985.243 kb on - strand, within JDDGAC_05645 at 985.281 kb on + strand, within JDDGAC_05645 at 985.305 kb on - strand at 985.335 kb on + strand at 985.336 kb on - strand at 985.336 kb on - strand at 985.555 kb on + strand, within gpG at 985.556 kb on - strand, within gpG at 985.556 kb on - strand, within gpG at 985.727 kb on - strand, within gpG at 985.729 kb on - strand, within gpG at 985.876 kb on - strand at 985.974 kb on + strand at 985.974 kb on + strand at 985.974 kb on + strand at 985.975 kb on - strand at 986.017 kb on - strand at 986.168 kb on - strand, within JDDGAC_05655
Per-strain Table
Position Strand Gene LocusTag Fraction Bas10 remove 984,231 + JDDGAC_05640 0.26 +0.3 984,374 - JDDGAC_05640 0.37 -0.6 984,381 + JDDGAC_05640 0.37 -1.4 984,401 + JDDGAC_05640 0.39 +0.2 984,408 + JDDGAC_05640 0.39 -0.3 984,579 + JDDGAC_05640 0.52 +1.9 984,624 + JDDGAC_05640 0.56 +0.9 984,624 + JDDGAC_05640 0.56 -1.6 984,624 + JDDGAC_05640 0.56 -0.5 984,626 + JDDGAC_05640 0.56 +1.0 984,627 - JDDGAC_05640 0.56 -1.1 985,035 + JDDGAC_05640 0.86 -1.9 985,035 + JDDGAC_05640 0.86 -0.3 985,035 + JDDGAC_05640 0.86 -0.2 985,036 - JDDGAC_05640 0.87 +0.4 985,037 + JDDGAC_05640 0.87 +0.5 985,038 - JDDGAC_05640 0.87 -0.7 985,038 - JDDGAC_05640 0.87 +2.1 985,086 + +0.0 985,243 - JDDGAC_05645 0.34 +0.3 985,281 + JDDGAC_05645 0.81 -1.7 985,305 - -1.5 985,335 + -0.4 985,336 - +0.1 985,336 - -2.0 985,555 + gpG JDDGAC_05650 0.46 -0.3 985,556 - gpG JDDGAC_05650 0.46 +0.6 985,556 - gpG JDDGAC_05650 0.46 -0.1 985,727 - gpG JDDGAC_05650 0.82 +0.3 985,729 - gpG JDDGAC_05650 0.83 -0.2 985,876 - +0.5 985,974 + -0.3 985,974 + -0.8 985,974 + -1.0 985,975 - -1.4 986,017 - +0.9 986,168 - JDDGAC_05655 0.16 -0.3
Or see this region's nucleotide sequence