Experiment: Bas10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydaU and JDDGAC_04635 are separated by 12 nucleotides JDDGAC_04635 and JDDGAC_04640 overlap by 4 nucleotides JDDGAC_04640 and JDDGAC_04645 are separated by 96 nucleotides JDDGAC_04645 and JDDGAC_04650 are separated by 305 nucleotides JDDGAC_04650 and JDDGAC_04655 are separated by 11 nucleotides
JDDGAC_04630: ydaU - Uncharacterized protein YdaU, at 806,791 to 807,660
ydaU
JDDGAC_04635: JDDGAC_04635 - Putative bacterial toxin ydaT, at 807,673 to 808,095
_04635
JDDGAC_04640: JDDGAC_04640 - transcriptional regulator, at 808,092 to 808,334
_04640
JDDGAC_04645: JDDGAC_04645 - transcriptional regulator, at 808,431 to 808,850
_04645
JDDGAC_04650: JDDGAC_04650 - DUF1391 domain-containing protein, at 809,156 to 809,308
_04650
JDDGAC_04655: JDDGAC_04655 - Ybl81, at 809,320 to 809,958
_04655
Position (kb) 808
809 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 807.157 kb on + strand, within ydaU at 807.569 kb on + strand, within ydaU at 807.570 kb on - strand, within ydaU at 807.578 kb on - strand at 807.593 kb on + strand at 807.646 kb on - strand at 807.732 kb on - strand, within JDDGAC_04635 at 807.936 kb on + strand, within JDDGAC_04635 at 808.002 kb on - strand, within JDDGAC_04635 at 808.002 kb on - strand, within JDDGAC_04635 at 808.012 kb on - strand, within JDDGAC_04635 at 808.012 kb on - strand, within JDDGAC_04635 at 808.146 kb on + strand, within JDDGAC_04640 at 808.146 kb on + strand, within JDDGAC_04640 at 808.187 kb on + strand, within JDDGAC_04640 at 808.868 kb on + strand at 808.868 kb on + strand at 808.868 kb on + strand at 808.917 kb on + strand at 808.981 kb on + strand at 809.018 kb on + strand at 809.049 kb on + strand at 809.070 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas10 remove 807,157 + ydaU JDDGAC_04630 0.42 +1.2 807,569 + ydaU JDDGAC_04630 0.89 +1.8 807,570 - ydaU JDDGAC_04630 0.90 +0.5 807,578 - +0.5 807,593 + +1.5 807,646 - +2.3 807,732 - JDDGAC_04635 0.14 -0.3 807,936 + JDDGAC_04635 0.62 +3.2 808,002 - JDDGAC_04635 0.78 -1.2 808,002 - JDDGAC_04635 0.78 -0.7 808,012 - JDDGAC_04635 0.80 -1.2 808,012 - JDDGAC_04635 0.80 +0.1 808,146 + JDDGAC_04640 0.22 +1.1 808,146 + JDDGAC_04640 0.22 +2.1 808,187 + JDDGAC_04640 0.39 -2.5 808,868 + +1.9 808,868 + +1.5 808,868 + +0.7 808,917 + +1.3 808,981 + -1.5 809,018 + +1.3 809,049 + -0.6 809,070 - +0.5
Or see this region's nucleotide sequence