Experiment: Bas10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aldA and ydcF are separated by 196 nucleotides ydcF and JDDGAC_04200 are separated by 115 nucleotides JDDGAC_04200 and JDDGAC_04205 are separated by 124 nucleotides
JDDGAC_04190: aldA - aldehyde dehydrogenase, at 732,051 to 733,490
aldA
JDDGAC_04195: ydcF - Protein YdcF, at 733,687 to 734,487
ydcF
JDDGAC_04200: JDDGAC_04200 - hypothetical protein, at 734,603 to 734,980
_04200
JDDGAC_04205: JDDGAC_04205 - hypothetical protein, at 735,105 to 735,536
_04205
Position (kb) 733
734
735 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 732.717 kb on - strand, within aldA at 733.074 kb on - strand, within aldA at 733.127 kb on - strand, within aldA at 733.158 kb on - strand, within aldA at 733.463 kb on - strand at 733.463 kb on - strand at 733.466 kb on + strand at 733.466 kb on + strand at 733.467 kb on - strand at 733.467 kb on - strand at 733.467 kb on - strand at 733.467 kb on - strand at 733.610 kb on + strand at 733.619 kb on + strand at 733.646 kb on + strand at 733.909 kb on + strand, within ydcF at 733.923 kb on + strand, within ydcF at 734.154 kb on + strand, within ydcF at 734.438 kb on - strand at 734.447 kb on - strand at 734.478 kb on + strand at 734.479 kb on - strand at 734.674 kb on - strand, within JDDGAC_04200 at 734.674 kb on - strand, within JDDGAC_04200 at 734.792 kb on - strand, within JDDGAC_04200 at 734.832 kb on - strand, within JDDGAC_04200 at 734.908 kb on - strand, within JDDGAC_04200
Per-strain Table
Position Strand Gene LocusTag Fraction Bas10 remove 732,717 - aldA JDDGAC_04190 0.46 +1.1 733,074 - aldA JDDGAC_04190 0.71 +1.7 733,127 - aldA JDDGAC_04190 0.75 +0.9 733,158 - aldA JDDGAC_04190 0.77 -0.4 733,463 - -0.6 733,463 - -0.2 733,466 + +1.6 733,466 + +0.2 733,467 - +0.1 733,467 - -0.5 733,467 - -2.0 733,467 - +0.2 733,610 + -0.5 733,619 + -0.1 733,646 + +0.3 733,909 + ydcF JDDGAC_04195 0.28 -0.4 733,923 + ydcF JDDGAC_04195 0.29 +0.3 734,154 + ydcF JDDGAC_04195 0.58 -2.3 734,438 - +0.8 734,447 - -0.3 734,478 + +0.3 734,479 - +3.3 734,674 - JDDGAC_04200 0.19 +0.5 734,674 - JDDGAC_04200 0.19 +0.6 734,792 - JDDGAC_04200 0.50 +0.1 734,832 - JDDGAC_04200 0.61 -0.1 734,908 - JDDGAC_04200 0.81 +0.3
Or see this region's nucleotide sequence