Experiment: Bas10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fliP and fliO overlap by 1 nucleotides fliO and fliN are separated by 2 nucleotides fliN and fliM overlap by 4 nucleotides fliM and fliL are separated by 4 nucleotides fliL and fliK are separated by 104 nucleotides
JDDGAC_00250: fliP - flagellar type III secretion system pore protein FliP, at 42,083 to 42,820
fliP
JDDGAC_00255: fliO - flagellar type III secretion system protein FliO, at 42,820 to 43,185
fliO
JDDGAC_00260: fliN - flagellar motor switch protein FliN, at 43,188 to 43,601
fliN
JDDGAC_00265: fliM - flagellar motor switch protein FliM, at 43,598 to 44,602
fliM
JDDGAC_00270: fliL - flagellar basal body-associated protein FliL, at 44,607 to 45,071
fliL
JDDGAC_00275: fliK - flagellar hook length control protein FliK, at 45,176 to 46,303
fliK
Position (kb) 43
44
45 Strain fitness (log2 ratio) -2
-1
0
1
2 at 42.648 kb on - strand, within fliP at 42.810 kb on - strand at 42.840 kb on + strand at 43.180 kb on - strand at 43.224 kb on - strand at 43.224 kb on - strand at 43.249 kb on + strand, within fliN at 43.250 kb on - strand, within fliN at 43.287 kb on + strand, within fliN at 43.287 kb on + strand, within fliN at 43.424 kb on + strand, within fliN at 43.587 kb on - strand at 43.653 kb on - strand at 44.086 kb on + strand, within fliM at 44.108 kb on - strand, within fliM at 44.109 kb on + strand, within fliM at 44.367 kb on - strand, within fliM at 44.591 kb on - strand at 44.618 kb on + strand at 44.627 kb on + strand at 44.629 kb on + strand at 44.851 kb on + strand, within fliL at 44.851 kb on + strand, within fliL at 44.852 kb on - strand, within fliL at 44.902 kb on + strand, within fliL at 44.903 kb on - strand, within fliL at 44.978 kb on - strand, within fliL at 44.978 kb on - strand, within fliL at 45.158 kb on - strand at 45.165 kb on + strand at 45.165 kb on + strand at 45.166 kb on - strand at 45.278 kb on + strand at 45.278 kb on + strand at 45.279 kb on - strand at 45.395 kb on + strand, within fliK at 45.426 kb on - strand, within fliK at 45.466 kb on + strand, within fliK at 45.500 kb on + strand, within fliK at 45.563 kb on - strand, within fliK at 45.572 kb on + strand, within fliK
Per-strain Table
Position Strand Gene LocusTag Fraction Bas10 remove 42,648 - fliP JDDGAC_00250 0.77 -1.0 42,810 - -0.4 42,840 + -0.1 43,180 - -1.1 43,224 - +0.3 43,224 - +0.4 43,249 + fliN JDDGAC_00260 0.15 +1.4 43,250 - fliN JDDGAC_00260 0.15 +0.2 43,287 + fliN JDDGAC_00260 0.24 -0.7 43,287 + fliN JDDGAC_00260 0.24 -0.3 43,424 + fliN JDDGAC_00260 0.57 -1.9 43,587 - +2.3 43,653 - -2.2 44,086 + fliM JDDGAC_00265 0.49 +1.0 44,108 - fliM JDDGAC_00265 0.51 -0.4 44,109 + fliM JDDGAC_00265 0.51 -1.9 44,367 - fliM JDDGAC_00265 0.77 -1.6 44,591 - +0.6 44,618 + -0.6 44,627 + -1.6 44,629 + -1.9 44,851 + fliL JDDGAC_00270 0.52 +0.7 44,851 + fliL JDDGAC_00270 0.52 -1.3 44,852 - fliL JDDGAC_00270 0.53 -0.3 44,902 + fliL JDDGAC_00270 0.63 -1.6 44,903 - fliL JDDGAC_00270 0.64 -1.8 44,978 - fliL JDDGAC_00270 0.80 -0.4 44,978 - fliL JDDGAC_00270 0.80 +0.1 45,158 - -2.6 45,165 + +0.2 45,165 + -0.6 45,166 - -0.7 45,278 + -0.3 45,278 + -0.7 45,279 - +1.6 45,395 + fliK JDDGAC_00275 0.19 -0.5 45,426 - fliK JDDGAC_00275 0.22 -0.0 45,466 + fliK JDDGAC_00275 0.26 -0.4 45,500 + fliK JDDGAC_00275 0.29 +0.6 45,563 - fliK JDDGAC_00275 0.34 +0.6 45,572 + fliK JDDGAC_00275 0.35 -0.9
Or see this region's nucleotide sequence