Experiment: GB_Bas36
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_23705 and MCAODC_23710 are separated by 325 nucleotides MCAODC_23710 and MCAODC_23715 are separated by 161 nucleotides
MCAODC_23705: MCAODC_23705 - IS66-like element ISEc8 family transposase, at 1,457,011 to 1,458,549
_23705
MCAODC_23710: MCAODC_23710 - hypothetical protein, at 1,458,875 to 1,459,144
_23710
MCAODC_23715: MCAODC_23715 - DEAD/DEAH box helicase, at 1,459,306 to 1,461,666
_23715
Position (kb)
1458
1459
1460 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1458.843 kb on - strand at 1458.844 kb on + strand at 1458.845 kb on - strand at 1458.856 kb on + strand at 1458.908 kb on + strand, within MCAODC_23710 at 1458.944 kb on - strand, within MCAODC_23710 at 1458.968 kb on - strand, within MCAODC_23710 at 1458.968 kb on - strand, within MCAODC_23710 at 1459.104 kb on - strand, within MCAODC_23710 at 1459.122 kb on + strand at 1459.143 kb on - strand at 1459.151 kb on - strand at 1459.210 kb on - strand at 1459.216 kb on + strand at 1459.231 kb on + strand at 1459.334 kb on - strand at 1459.358 kb on + strand at 1459.401 kb on - strand at 1459.473 kb on - strand at 1459.480 kb on + strand at 1459.481 kb on - strand at 1459.481 kb on - strand at 1459.481 kb on - strand at 1459.696 kb on + strand, within MCAODC_23715 at 1459.717 kb on - strand, within MCAODC_23715 at 1459.717 kb on - strand, within MCAODC_23715 at 1459.920 kb on + strand, within MCAODC_23715 at 1459.921 kb on - strand, within MCAODC_23715 at 1459.940 kb on + strand, within MCAODC_23715 at 1459.941 kb on - strand, within MCAODC_23715 at 1459.941 kb on - strand, within MCAODC_23715 at 1459.941 kb on - strand, within MCAODC_23715 at 1459.941 kb on - strand, within MCAODC_23715 at 1460.053 kb on - strand, within MCAODC_23715 at 1460.053 kb on - strand, within MCAODC_23715
Per-strain Table
Position Strand Gene LocusTag Fraction GB_Bas36 remove 1,458,843 - -0.1 1,458,844 + -1.0 1,458,845 - +1.2 1,458,856 + +3.0 1,458,908 + MCAODC_23710 0.12 -1.7 1,458,944 - MCAODC_23710 0.26 +0.2 1,458,968 - MCAODC_23710 0.34 +0.4 1,458,968 - MCAODC_23710 0.34 +1.1 1,459,104 - MCAODC_23710 0.85 -1.4 1,459,122 + -0.9 1,459,143 - -1.0 1,459,151 - -0.1 1,459,210 - -0.4 1,459,216 + -0.5 1,459,231 + -1.7 1,459,334 - -1.8 1,459,358 + -1.0 1,459,401 - +0.2 1,459,473 - -1.2 1,459,480 + -2.1 1,459,481 - +1.8 1,459,481 - -1.2 1,459,481 - +1.1 1,459,696 + MCAODC_23715 0.17 +0.2 1,459,717 - MCAODC_23715 0.17 -1.7 1,459,717 - MCAODC_23715 0.17 +1.8 1,459,920 + MCAODC_23715 0.26 +0.8 1,459,921 - MCAODC_23715 0.26 -1.6 1,459,940 + MCAODC_23715 0.27 -0.7 1,459,941 - MCAODC_23715 0.27 -0.9 1,459,941 - MCAODC_23715 0.27 +0.8 1,459,941 - MCAODC_23715 0.27 +0.4 1,459,941 - MCAODC_23715 0.27 +0.4 1,460,053 - MCAODC_23715 0.32 +1.8 1,460,053 - MCAODC_23715 0.32 +0.7
Or see this region's nucleotide sequence