Strain Fitness in Escherichia coli ECRC101 around MCAODC_21375

Experiment: GB_Bas36

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgpA1 and nu1 overlap by 26 nucleotidesnu1 and MCAODC_21380 are separated by 692 nucleotides MCAODC_21370: gpA1 - terminase, at 1,073,576 to 1,075,501 gpA1 MCAODC_21375: nu1 - terminase small subunit, at 1,075,476 to 1,076,021 nu1 MCAODC_21380: MCAODC_21380 - PerC family transcriptional regulator, at 1,076,714 to 1,077,028 _21380 Position (kb) 1075 1076 1077Strain fitness (log2 ratio) -2 -1 0 1at 1074.901 kb on + strand, within gpA1at 1075.064 kb on - strand, within gpA1at 1075.126 kb on + strand, within gpA1at 1075.221 kb on - strand, within gpA1at 1075.474 kb on + strandat 1075.475 kb on - strandat 1075.496 kb on - strandat 1075.755 kb on - strand, within nu1at 1075.778 kb on + strand, within nu1at 1076.179 kb on - strandat 1076.179 kb on - strandat 1076.407 kb on + strandat 1076.408 kb on - strandat 1076.408 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction GB_Bas36
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1,074,901 + gpA1 MCAODC_21370 0.69 -1.4
1,075,064 - gpA1 MCAODC_21370 0.77 -0.6
1,075,126 + gpA1 MCAODC_21370 0.80 -2.3
1,075,221 - gpA1 MCAODC_21370 0.85 +0.4
1,075,474 + +1.0
1,075,475 - -0.6
1,075,496 - +0.2
1,075,755 - nu1 MCAODC_21375 0.51 -1.7
1,075,778 + nu1 MCAODC_21375 0.55 -2.3
1,076,179 - -2.1
1,076,179 - +0.2
1,076,407 + +1.4
1,076,408 - -1.0
1,076,408 - +0.5

Or see this region's nucleotide sequence