Strain Fitness in Escherichia coli ECRC101 around MCAODC_20100

Experiment: GB_Bas36

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMCAODC_20090 and MCAODC_20095 are separated by 126 nucleotidesMCAODC_20095 and MCAODC_20100 overlap by 4 nucleotidesMCAODC_20100 and MCAODC_20105 are separated by 32 nucleotidesMCAODC_20105 and MCAODC_20110 overlap by 4 nucleotidesMCAODC_20110 and MCAODC_20115 are separated by 21 nucleotides MCAODC_20090: MCAODC_20090 - DUF551 domain-containing protein, at 830,577 to 831,140 _20090 MCAODC_20095: MCAODC_20095 - Prophage protein, at 831,267 to 831,578 _20095 MCAODC_20100: MCAODC_20100 - hypothetical protein, at 831,575 to 831,727 _20100 MCAODC_20105: MCAODC_20105 - Eae-like protein, at 831,760 to 832,116 _20105 MCAODC_20110: MCAODC_20110 - hypothetical protein, at 832,113 to 832,337 _20110 MCAODC_20115: MCAODC_20115 - DUF1627 domain-containing protein, at 832,359 to 833,057 _20115 Position (kb) 831 832Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 830.642 kb on + strand, within MCAODC_20090at 830.823 kb on - strand, within MCAODC_20090at 831.035 kb on + strand, within MCAODC_20090at 831.130 kb on - strandat 831.260 kb on - strandat 831.294 kb on + strandat 831.381 kb on - strand, within MCAODC_20095at 831.567 kb on - strandat 831.638 kb on - strand, within MCAODC_20100at 831.758 kb on - strandat 831.805 kb on + strand, within MCAODC_20105at 831.805 kb on + strand, within MCAODC_20105at 831.805 kb on + strand, within MCAODC_20105at 831.805 kb on + strand, within MCAODC_20105at 831.806 kb on - strand, within MCAODC_20105at 831.806 kb on - strand, within MCAODC_20105at 831.891 kb on - strand, within MCAODC_20105at 831.891 kb on - strand, within MCAODC_20105at 831.915 kb on - strand, within MCAODC_20105at 831.926 kb on + strand, within MCAODC_20105at 831.926 kb on + strand, within MCAODC_20105at 831.927 kb on - strand, within MCAODC_20105at 831.927 kb on - strand, within MCAODC_20105at 831.927 kb on - strand, within MCAODC_20105at 831.931 kb on - strand, within MCAODC_20105at 831.931 kb on - strand, within MCAODC_20105at 831.974 kb on - strand, within MCAODC_20105at 831.974 kb on - strand, within MCAODC_20105at 831.975 kb on + strand, within MCAODC_20105at 831.976 kb on - strand, within MCAODC_20105at 832.058 kb on - strand, within MCAODC_20105at 832.143 kb on - strand, within MCAODC_20110at 832.143 kb on - strand, within MCAODC_20110at 832.144 kb on + strand, within MCAODC_20110at 832.260 kb on - strand, within MCAODC_20110at 832.293 kb on - strand, within MCAODC_20110at 832.293 kb on - strand, within MCAODC_20110at 832.299 kb on - strand, within MCAODC_20110

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction GB_Bas36
remove
830,642 + MCAODC_20090 0.12 -1.5
830,823 - MCAODC_20090 0.44 +0.9
831,035 + MCAODC_20090 0.81 +0.4
831,130 - -1.6
831,260 - +1.5
831,294 + -0.7
831,381 - MCAODC_20095 0.37 +0.8
831,567 - -0.1
831,638 - MCAODC_20100 0.41 -1.4
831,758 - -1.4
831,805 + MCAODC_20105 0.13 -2.2
831,805 + MCAODC_20105 0.13 +0.8
831,805 + MCAODC_20105 0.13 +2.3
831,805 + MCAODC_20105 0.13 -2.3
831,806 - MCAODC_20105 0.13 -0.1
831,806 - MCAODC_20105 0.13 -1.7
831,891 - MCAODC_20105 0.37 +1.0
831,891 - MCAODC_20105 0.37 +1.2
831,915 - MCAODC_20105 0.43 -3.0
831,926 + MCAODC_20105 0.46 +0.2
831,926 + MCAODC_20105 0.46 -1.0
831,927 - MCAODC_20105 0.47 -0.8
831,927 - MCAODC_20105 0.47 -2.1
831,927 - MCAODC_20105 0.47 +0.2
831,931 - MCAODC_20105 0.48 +0.3
831,931 - MCAODC_20105 0.48 -1.6
831,974 - MCAODC_20105 0.60 -0.0
831,974 - MCAODC_20105 0.60 +0.2
831,975 + MCAODC_20105 0.60 -0.6
831,976 - MCAODC_20105 0.61 +0.5
832,058 - MCAODC_20105 0.83 +3.5
832,143 - MCAODC_20110 0.13 -0.6
832,143 - MCAODC_20110 0.13 +0.7
832,144 + MCAODC_20110 0.14 +1.3
832,260 - MCAODC_20110 0.65 +0.2
832,293 - MCAODC_20110 0.80 +1.3
832,293 - MCAODC_20110 0.80 +1.8
832,299 - MCAODC_20110 0.83 -0.0

Or see this region's nucleotide sequence