Experiment: GB_Bas36
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fliR and rcsA are separated by 289 nucleotides rcsA and dsrB are separated by 43 nucleotides dsrB and yodD are separated by 162 nucleotides yodD and yedP are separated by 297 nucleotides
MCAODC_19740: fliR - flagellar type III secretion system protein FliR, at 776,648 to 777,433
fliR
MCAODC_19745: rcsA - transcriptional regulator RcsA, at 777,723 to 778,346
rcsA
MCAODC_19750: dsrB - protein DsrB, at 778,390 to 778,578
dsrB
MCAODC_19755: yodD - YodD family peroxide/acid resistance protein, at 778,741 to 778,968
yodD
MCAODC_19765: yedP - mannosyl-3-phosphoglycerate phosphatase-related protein, at 779,266 to 780,081
yedP
Position (kb) 778
779 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 777.605 kb on + strand at 777.695 kb on - strand at 777.695 kb on - strand at 777.764 kb on - strand at 777.777 kb on + strand at 778.038 kb on - strand, within rcsA at 778.115 kb on - strand, within rcsA at 778.244 kb on + strand, within rcsA at 778.257 kb on - strand, within rcsA at 778.287 kb on + strand at 778.413 kb on + strand, within dsrB at 778.482 kb on - strand, within dsrB at 778.609 kb on - strand at 778.672 kb on + strand at 778.672 kb on + strand at 778.673 kb on - strand at 778.676 kb on + strand at 778.676 kb on + strand at 778.676 kb on + strand at 778.677 kb on - strand at 778.759 kb on + strand at 778.891 kb on + strand, within yodD at 778.891 kb on + strand, within yodD at 778.896 kb on + strand, within yodD at 778.896 kb on + strand, within yodD at 778.897 kb on - strand, within yodD at 778.897 kb on - strand, within yodD at 778.897 kb on - strand, within yodD at 778.897 kb on - strand, within yodD at 778.932 kb on + strand, within yodD at 778.978 kb on - strand at 779.107 kb on + strand at 779.117 kb on - strand at 779.133 kb on - strand at 779.133 kb on - strand at 779.331 kb on + strand at 779.331 kb on + strand at 779.331 kb on + strand at 779.331 kb on + strand at 779.331 kb on + strand at 779.335 kb on + strand at 779.336 kb on - strand at 779.409 kb on + strand, within yedP at 779.410 kb on - strand, within yedP at 779.463 kb on - strand, within yedP at 779.547 kb on + strand, within yedP at 779.548 kb on - strand, within yedP
Per-strain Table
Position Strand Gene LocusTag Fraction GB_Bas36 remove 777,605 + +0.8 777,695 - +0.4 777,695 - +1.2 777,764 - -0.5 777,777 + +3.4 778,038 - rcsA MCAODC_19745 0.50 +1.5 778,115 - rcsA MCAODC_19745 0.63 +0.3 778,244 + rcsA MCAODC_19745 0.83 +0.3 778,257 - rcsA MCAODC_19745 0.86 +0.3 778,287 + +1.0 778,413 + dsrB MCAODC_19750 0.12 -0.1 778,482 - dsrB MCAODC_19750 0.49 -1.1 778,609 - -3.1 778,672 + -0.5 778,672 + +2.7 778,673 - +0.0 778,676 + -1.0 778,676 + +2.1 778,676 + +0.2 778,677 - +0.8 778,759 + +0.8 778,891 + yodD MCAODC_19755 0.66 -0.0 778,891 + yodD MCAODC_19755 0.66 +0.2 778,896 + yodD MCAODC_19755 0.68 +0.2 778,896 + yodD MCAODC_19755 0.68 -1.2 778,897 - yodD MCAODC_19755 0.68 +2.1 778,897 - yodD MCAODC_19755 0.68 +0.1 778,897 - yodD MCAODC_19755 0.68 +0.8 778,897 - yodD MCAODC_19755 0.68 -1.5 778,932 + yodD MCAODC_19755 0.84 +0.2 778,978 - +0.8 779,107 + +0.8 779,117 - -0.6 779,133 - +1.0 779,133 - +1.9 779,331 + -0.0 779,331 + -1.0 779,331 + -1.2 779,331 + -2.4 779,331 + +0.4 779,335 + +1.0 779,336 - -0.0 779,409 + yedP MCAODC_19765 0.18 -3.0 779,410 - yedP MCAODC_19765 0.18 -1.5 779,463 - yedP MCAODC_19765 0.24 -0.2 779,547 + yedP MCAODC_19765 0.34 +0.4 779,548 - yedP MCAODC_19765 0.35 -0.0
Or see this region's nucleotide sequence