Experiment: GB_Bas36
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gpA1 and cysE are separated by 43 nucleotides cysE and MCAODC_19505 are separated by 156 nucleotides MCAODC_19505 and MCAODC_19510 are separated by 12 nucleotides MCAODC_19510 and MCAODC_19515 are separated by 11 nucleotides
MCAODC_19490: gpA1 - Phage terminase, large subunit GpA, at 734,052 to 734,468
gpA1
MCAODC_19500: cysE - serine acetyltransferase, at 734,512 to 735,084
cysE
MCAODC_19505: MCAODC_19505 - oxidoreductase, at 735,241 to 735,729
_19505
MCAODC_19510: MCAODC_19510 - Putative tail fiber protein of prophage CP-933T, at 735,742 to 736,443
_19510
MCAODC_19515: MCAODC_19515 - Putative tail fiber component of prophage CP-933T, at 736,455 to 738,545
_19515
Position (kb) 735
736 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 734.424 kb on - strand, within gpA1 at 734.431 kb on + strand at 734.548 kb on - strand at 734.722 kb on - strand, within cysE at 734.732 kb on - strand, within cysE at 734.887 kb on + strand, within cysE at 735.101 kb on - strand at 735.187 kb on + strand at 735.232 kb on + strand at 735.232 kb on + strand at 735.232 kb on + strand at 735.232 kb on + strand at 735.233 kb on - strand at 735.295 kb on - strand, within MCAODC_19505 at 735.452 kb on + strand, within MCAODC_19505 at 735.452 kb on + strand, within MCAODC_19505 at 735.452 kb on + strand, within MCAODC_19505 at 735.453 kb on - strand, within MCAODC_19505 at 735.453 kb on - strand, within MCAODC_19505 at 735.453 kb on - strand, within MCAODC_19505 at 735.504 kb on + strand, within MCAODC_19505 at 735.505 kb on - strand, within MCAODC_19505 at 735.505 kb on - strand, within MCAODC_19505 at 735.505 kb on - strand, within MCAODC_19505 at 735.505 kb on - strand, within MCAODC_19505 at 735.505 kb on - strand, within MCAODC_19505 at 735.506 kb on + strand, within MCAODC_19505 at 735.507 kb on - strand, within MCAODC_19505 at 735.507 kb on - strand, within MCAODC_19505 at 735.604 kb on - strand, within MCAODC_19505 at 735.605 kb on + strand, within MCAODC_19505 at 735.606 kb on - strand, within MCAODC_19505 at 735.606 kb on - strand, within MCAODC_19505 at 735.946 kb on + strand, within MCAODC_19510 at 736.030 kb on - strand, within MCAODC_19510 at 736.033 kb on - strand, within MCAODC_19510 at 736.050 kb on + strand, within MCAODC_19510 at 736.051 kb on - strand, within MCAODC_19510 at 736.168 kb on - strand, within MCAODC_19510 at 736.168 kb on - strand, within MCAODC_19510 at 736.249 kb on - strand, within MCAODC_19510 at 736.270 kb on - strand, within MCAODC_19510 at 736.432 kb on - strand at 736.469 kb on - strand at 736.513 kb on - strand at 736.519 kb on - strand at 736.519 kb on - strand at 736.572 kb on + strand at 736.573 kb on - strand at 736.695 kb on - strand, within MCAODC_19515 at 736.705 kb on + strand, within MCAODC_19515
Per-strain Table
Position Strand Gene LocusTag Fraction GB_Bas36 remove 734,424 - gpA1 MCAODC_19490 0.89 +0.1 734,431 + -0.1 734,548 - +0.3 734,722 - cysE MCAODC_19500 0.37 -0.8 734,732 - cysE MCAODC_19500 0.38 +0.3 734,887 + cysE MCAODC_19500 0.65 -1.4 735,101 - +0.4 735,187 + -2.5 735,232 + +1.0 735,232 + -1.6 735,232 + +0.0 735,232 + +1.0 735,233 - +1.9 735,295 - MCAODC_19505 0.11 -0.6 735,452 + MCAODC_19505 0.43 +0.8 735,452 + MCAODC_19505 0.43 -1.2 735,452 + MCAODC_19505 0.43 -0.1 735,453 - MCAODC_19505 0.43 +0.0 735,453 - MCAODC_19505 0.43 -1.3 735,453 - MCAODC_19505 0.43 -0.5 735,504 + MCAODC_19505 0.54 +1.0 735,505 - MCAODC_19505 0.54 -1.7 735,505 - MCAODC_19505 0.54 -1.3 735,505 - MCAODC_19505 0.54 -1.6 735,505 - MCAODC_19505 0.54 -1.5 735,505 - MCAODC_19505 0.54 -1.2 735,506 + MCAODC_19505 0.54 -1.6 735,507 - MCAODC_19505 0.54 -2.3 735,507 - MCAODC_19505 0.54 +0.4 735,604 - MCAODC_19505 0.74 -1.1 735,605 + MCAODC_19505 0.74 +0.8 735,606 - MCAODC_19505 0.75 -0.7 735,606 - MCAODC_19505 0.75 +0.4 735,946 + MCAODC_19510 0.29 -0.0 736,030 - MCAODC_19510 0.41 -1.4 736,033 - MCAODC_19510 0.41 +0.2 736,050 + MCAODC_19510 0.44 -0.4 736,051 - MCAODC_19510 0.44 -0.3 736,168 - MCAODC_19510 0.61 +0.0 736,168 - MCAODC_19510 0.61 -0.3 736,249 - MCAODC_19510 0.72 -1.9 736,270 - MCAODC_19510 0.75 -3.0 736,432 - +0.6 736,469 - +0.0 736,513 - -0.9 736,519 - +0.6 736,519 - -0.7 736,572 + -0.1 736,573 - +1.5 736,695 - MCAODC_19515 0.11 +0.7 736,705 + MCAODC_19515 0.12 -0.6
Or see this region's nucleotide sequence