Experiment: GB_Bas36
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt chbC and chbB are separated by 84 nucleotides chbB and osmE are separated by 299 nucleotides osmE and nadE are separated by 201 nucleotides
MCAODC_18445: chbC - PTS N,N'-diacetylchitobiose transporter subunit IIC, at 548,635 to 549,993
chbC
MCAODC_18450: chbB - PTS N,N'-diacetylchitobiose transporter subunit IIB, at 550,078 to 550,398
chbB
MCAODC_18455: osmE - osmotically-inducible lipoprotein OsmE, at 550,698 to 551,036
osmE
MCAODC_18460: nadE - ammonia-dependent NAD(+) synthetase, at 551,238 to 552,065
nadE
Position (kb) 550
551 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 549.285 kb on - strand, within chbC at 549.498 kb on + strand, within chbC at 549.600 kb on + strand, within chbC at 549.601 kb on - strand, within chbC at 549.601 kb on - strand, within chbC at 549.601 kb on - strand, within chbC at 549.603 kb on - strand, within chbC at 549.737 kb on - strand, within chbC at 549.751 kb on - strand, within chbC at 550.048 kb on + strand at 550.119 kb on + strand, within chbB at 550.231 kb on + strand, within chbB at 550.346 kb on - strand, within chbB at 550.380 kb on - strand at 550.515 kb on - strand at 550.516 kb on + strand at 550.516 kb on + strand at 550.789 kb on + strand, within osmE at 550.826 kb on - strand, within osmE at 550.967 kb on - strand, within osmE at 550.974 kb on - strand, within osmE at 550.974 kb on - strand, within osmE at 551.068 kb on + strand at 551.068 kb on + strand at 551.068 kb on + strand at 551.068 kb on + strand at 551.069 kb on - strand at 551.069 kb on - strand at 551.069 kb on - strand at 551.079 kb on + strand at 551.138 kb on + strand at 551.149 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction GB_Bas36 remove 549,285 - chbC MCAODC_18445 0.48 -0.6 549,498 + chbC MCAODC_18445 0.64 +1.4 549,600 + chbC MCAODC_18445 0.71 +0.1 549,601 - chbC MCAODC_18445 0.71 +0.7 549,601 - chbC MCAODC_18445 0.71 -0.9 549,601 - chbC MCAODC_18445 0.71 -1.2 549,603 - chbC MCAODC_18445 0.71 +1.7 549,737 - chbC MCAODC_18445 0.81 +0.6 549,751 - chbC MCAODC_18445 0.82 +0.6 550,048 + -1.4 550,119 + chbB MCAODC_18450 0.13 -2.0 550,231 + chbB MCAODC_18450 0.48 -1.0 550,346 - chbB MCAODC_18450 0.83 -0.5 550,380 - -3.4 550,515 - -0.5 550,516 + +1.8 550,516 + -0.6 550,789 + osmE MCAODC_18455 0.27 +0.1 550,826 - osmE MCAODC_18455 0.38 +1.1 550,967 - osmE MCAODC_18455 0.79 +1.1 550,974 - osmE MCAODC_18455 0.81 +0.2 550,974 - osmE MCAODC_18455 0.81 -0.5 551,068 + +0.4 551,068 + -0.0 551,068 + -0.0 551,068 + +1.1 551,069 - +0.8 551,069 - -0.3 551,069 - +0.3 551,079 + +0.1 551,138 + -1.6 551,149 - +0.6
Or see this region's nucleotide sequence