Experiment: GB_Bas36
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_17475 and MCAODC_17485 are separated by 44 nucleotides MCAODC_17485 and MCAODC_17490 overlap by 12 nucleotides MCAODC_17490 and MCAODC_17495 are separated by 115 nucleotides MCAODC_17495 and MCAODC_17500 are separated by 56 nucleotides MCAODC_17500 and MCAODC_17505 are separated by 15 nucleotides
MCAODC_17475: MCAODC_17475 - protein hokC, at 371,456 to 371,668
_17475
MCAODC_17485: MCAODC_17485 - hypothetical protein, at 371,713 to 371,868
_17485
MCAODC_17490: MCAODC_17490 - hypothetical protein, at 371,857 to 371,961
_17490
MCAODC_17495: MCAODC_17495 - DUF551 domain-containing protein, at 372,077 to 372,661
_17495
MCAODC_17500: MCAODC_17500 - DUF977 domain-containing protein, at 372,718 to 373,113
_17500
MCAODC_17505: MCAODC_17505 - DUF1627 domain-containing protein, at 373,129 to 373,797
_17505
Position (kb) 372
373 Strain fitness (log2 ratio) -1
0
1 at 372.301 kb on - strand, within MCAODC_17495 at 372.409 kb on - strand, within MCAODC_17495 at 372.409 kb on - strand, within MCAODC_17495 at 372.410 kb on + strand, within MCAODC_17495 at 372.411 kb on - strand, within MCAODC_17495 at 372.436 kb on + strand, within MCAODC_17495 at 372.490 kb on + strand, within MCAODC_17495 at 372.543 kb on - strand, within MCAODC_17495 at 372.711 kb on - strand at 372.750 kb on - strand at 372.750 kb on - strand at 372.844 kb on + strand, within MCAODC_17500 at 372.889 kb on - strand, within MCAODC_17500 at 372.944 kb on + strand, within MCAODC_17500 at 372.947 kb on - strand, within MCAODC_17500 at 372.965 kb on - strand, within MCAODC_17500
Per-strain Table
Position Strand Gene LocusTag Fraction GB_Bas36 remove 372,301 - MCAODC_17495 0.38 -0.9 372,409 - MCAODC_17495 0.57 +1.6 372,409 - MCAODC_17495 0.57 -1.4 372,410 + MCAODC_17495 0.57 +0.9 372,411 - MCAODC_17495 0.57 -0.5 372,436 + MCAODC_17495 0.61 +0.6 372,490 + MCAODC_17495 0.71 +0.9 372,543 - MCAODC_17495 0.80 -1.5 372,711 - -0.6 372,750 - -0.2 372,750 - -0.4 372,844 + MCAODC_17500 0.32 +1.5 372,889 - MCAODC_17500 0.43 -0.4 372,944 + MCAODC_17500 0.57 -0.0 372,947 - MCAODC_17500 0.58 +1.0 372,965 - MCAODC_17500 0.62 +0.3
Or see this region's nucleotide sequence