Experiment: GB_Bas36
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_17120 and MCAODC_17125 are separated by 1 nucleotides MCAODC_17125 and ydeI are separated by 121 nucleotides ydeI and MCAODC_17135 are separated by 119 nucleotides MCAODC_17135 and MCAODC_17145 are separated by 153 nucleotides
MCAODC_17120: MCAODC_17120 - DUF968 domain-containing protein, at 323,014 to 324,063
_17120
MCAODC_17125: MCAODC_17125 - hypothetical protein, at 324,065 to 324,337
_17125
MCAODC_17130: ydeI - TIGR00156 family protein, at 324,459 to 324,803
ydeI
MCAODC_17135: MCAODC_17135 - protein hokC, at 324,923 to 325,135
_17135
MCAODC_17145: MCAODC_17145 - Bacteriophage protein, at 325,289 to 325,372
_17145
Position (kb) 324
325 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 323.608 kb on + strand, within MCAODC_17120 at 323.609 kb on - strand, within MCAODC_17120 at 323.609 kb on - strand, within MCAODC_17120 at 323.617 kb on + strand, within MCAODC_17120 at 323.655 kb on + strand, within MCAODC_17120 at 323.656 kb on - strand, within MCAODC_17120 at 323.656 kb on - strand, within MCAODC_17120 at 323.766 kb on - strand, within MCAODC_17120 at 323.803 kb on + strand, within MCAODC_17120 at 323.803 kb on + strand, within MCAODC_17120 at 324.053 kb on - strand at 324.055 kb on + strand at 324.129 kb on + strand, within MCAODC_17125 at 324.130 kb on - strand, within MCAODC_17125 at 324.131 kb on + strand, within MCAODC_17125 at 324.232 kb on + strand, within MCAODC_17125 at 324.243 kb on + strand, within MCAODC_17125 at 324.777 kb on - strand at 324.793 kb on - strand at 324.854 kb on - strand at 324.854 kb on - strand at 324.904 kb on + strand at 324.925 kb on - strand at 324.925 kb on - strand at 324.945 kb on - strand, within MCAODC_17135 at 325.120 kb on + strand at 325.258 kb on + strand at 325.258 kb on + strand at 325.262 kb on + strand at 325.312 kb on - strand, within MCAODC_17145
Per-strain Table
Position Strand Gene LocusTag Fraction GB_Bas36 remove 323,608 + MCAODC_17120 0.57 -0.9 323,609 - MCAODC_17120 0.57 -1.3 323,609 - MCAODC_17120 0.57 -1.2 323,617 + MCAODC_17120 0.57 +1.6 323,655 + MCAODC_17120 0.61 +1.0 323,656 - MCAODC_17120 0.61 +3.4 323,656 - MCAODC_17120 0.61 -1.2 323,766 - MCAODC_17120 0.72 +2.5 323,803 + MCAODC_17120 0.75 +0.2 323,803 + MCAODC_17120 0.75 -0.7 324,053 - +1.1 324,055 + -0.9 324,129 + MCAODC_17125 0.23 +3.4 324,130 - MCAODC_17125 0.24 -1.9 324,131 + MCAODC_17125 0.24 -0.7 324,232 + MCAODC_17125 0.61 -0.0 324,243 + MCAODC_17125 0.65 -0.4 324,777 - +0.4 324,793 - +0.7 324,854 - +0.1 324,854 - +0.8 324,904 + +2.4 324,925 - -0.0 324,925 - -0.3 324,945 - MCAODC_17135 0.10 -1.1 325,120 + -0.1 325,258 + -0.4 325,258 + +0.2 325,262 + -0.4 325,312 - MCAODC_17145 0.27 -1.3
Or see this region's nucleotide sequence