Experiment: GB_Bas36
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt maeA and sra are separated by 156 nucleotides sra and bdm are separated by 101 nucleotides bdm and osmC are separated by 344 nucleotides osmC and ddpF are separated by 55 nucleotides
MCAODC_16580: maeA - malate dehydrogenase, at 212,788 to 214,485
maeA
MCAODC_16585: sra - stationary-phase-induced ribosome-associated protein, at 214,642 to 214,779
sra
MCAODC_16590: bdm - biofilm-dependent modulation protein, at 214,881 to 215,096
bdm
MCAODC_16595: osmC - peroxiredoxin OsmC, at 215,441 to 215,872
osmC
MCAODC_16600: ddpF - putative D,D-dipeptide transport ATP-binding protein DdpF, at 215,928 to 216,854
ddpF
Position (kb) 214
215
216 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 213.921 kb on - strand, within maeA at 213.921 kb on - strand, within maeA at 213.921 kb on - strand, within maeA at 214.015 kb on - strand, within maeA at 214.045 kb on - strand, within maeA at 214.176 kb on - strand, within maeA at 214.180 kb on - strand, within maeA at 214.221 kb on - strand, within maeA at 214.221 kb on - strand, within maeA at 214.221 kb on - strand, within maeA at 214.371 kb on + strand at 214.451 kb on + strand at 214.566 kb on - strand at 214.566 kb on - strand at 214.567 kb on + strand at 214.577 kb on - strand at 214.682 kb on - strand, within sra at 214.682 kb on - strand, within sra at 214.682 kb on - strand, within sra at 214.711 kb on + strand, within sra at 214.712 kb on - strand, within sra at 214.753 kb on - strand, within sra at 214.809 kb on - strand at 214.857 kb on - strand at 214.874 kb on + strand at 214.875 kb on - strand at 214.875 kb on - strand at 214.889 kb on + strand at 214.912 kb on + strand, within bdm at 214.913 kb on - strand, within bdm at 214.934 kb on + strand, within bdm at 214.934 kb on + strand, within bdm at 215.122 kb on - strand at 215.191 kb on + strand at 215.272 kb on - strand at 215.294 kb on + strand at 215.452 kb on + strand at 215.870 kb on + strand at 216.074 kb on + strand, within ddpF
Per-strain Table
Position Strand Gene LocusTag Fraction GB_Bas36 remove 213,921 - maeA MCAODC_16580 0.67 -1.1 213,921 - maeA MCAODC_16580 0.67 +0.0 213,921 - maeA MCAODC_16580 0.67 -0.5 214,015 - maeA MCAODC_16580 0.72 +2.0 214,045 - maeA MCAODC_16580 0.74 +0.2 214,176 - maeA MCAODC_16580 0.82 -0.8 214,180 - maeA MCAODC_16580 0.82 +2.7 214,221 - maeA MCAODC_16580 0.84 +0.7 214,221 - maeA MCAODC_16580 0.84 -0.8 214,221 - maeA MCAODC_16580 0.84 -1.1 214,371 + -1.1 214,451 + +0.9 214,566 - -1.0 214,566 - -0.7 214,567 + -0.6 214,577 - -1.0 214,682 - sra MCAODC_16585 0.29 +2.3 214,682 - sra MCAODC_16585 0.29 -1.1 214,682 - sra MCAODC_16585 0.29 +3.2 214,711 + sra MCAODC_16585 0.50 +0.4 214,712 - sra MCAODC_16585 0.51 -2.0 214,753 - sra MCAODC_16585 0.80 +0.7 214,809 - +0.2 214,857 - -1.4 214,874 + -0.1 214,875 - -0.9 214,875 - -0.3 214,889 + -0.9 214,912 + bdm MCAODC_16590 0.14 -0.5 214,913 - bdm MCAODC_16590 0.15 -0.0 214,934 + bdm MCAODC_16590 0.25 -0.0 214,934 + bdm MCAODC_16590 0.25 -1.7 215,122 - +0.5 215,191 + -0.7 215,272 - +0.3 215,294 + +3.3 215,452 + +0.8 215,870 + +0.9 216,074 + ddpF MCAODC_16600 0.16 +4.0
Or see this region's nucleotide sequence