Strain Fitness in Escherichia coli ECRC101 around MCAODC_04655

Experiment: GB_Bas36

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpolA and MCAODC_04655 are separated by 58 nucleotidesMCAODC_04655 and yihG are separated by 119 nucleotides MCAODC_04650: polA - DNA polymerase I, at 940,446 to 943,232 polA MCAODC_04655: MCAODC_04655 - hypothetical protein, at 943,291 to 943,476 _04655 MCAODC_04660: yihG - putative acyltransferase YihG, at 943,596 to 944,528 yihG Position (kb) 943 944Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 943.285 kb on - strandat 943.379 kb on + strand, within MCAODC_04655at 943.467 kb on + strandat 943.471 kb on - strandat 943.480 kb on - strandat 943.507 kb on + strandat 943.583 kb on + strandat 943.661 kb on + strandat 943.666 kb on + strandat 943.666 kb on + strandat 943.686 kb on - strandat 943.729 kb on + strand, within yihGat 943.729 kb on + strand, within yihGat 943.730 kb on - strand, within yihGat 943.735 kb on + strand, within yihGat 943.735 kb on + strand, within yihGat 943.735 kb on + strand, within yihGat 943.735 kb on + strand, within yihGat 943.736 kb on - strand, within yihGat 943.781 kb on + strand, within yihGat 943.781 kb on + strand, within yihGat 943.782 kb on - strand, within yihGat 943.782 kb on - strand, within yihGat 943.788 kb on + strand, within yihGat 943.788 kb on + strand, within yihGat 943.788 kb on + strand, within yihGat 943.788 kb on + strand, within yihGat 943.788 kb on + strand, within yihGat 943.788 kb on + strand, within yihGat 943.789 kb on - strand, within yihGat 943.789 kb on - strand, within yihGat 943.789 kb on - strand, within yihGat 943.789 kb on - strand, within yihGat 943.789 kb on - strand, within yihGat 943.813 kb on + strand, within yihGat 943.814 kb on - strand, within yihGat 943.816 kb on + strand, within yihGat 943.816 kb on + strand, within yihGat 943.867 kb on + strand, within yihGat 943.867 kb on + strand, within yihGat 943.868 kb on - strand, within yihGat 943.868 kb on - strand, within yihGat 943.872 kb on - strand, within yihGat 943.893 kb on - strand, within yihGat 943.893 kb on - strand, within yihGat 943.893 kb on - strand, within yihGat 943.898 kb on + strand, within yihGat 943.898 kb on + strand, within yihGat 943.899 kb on - strand, within yihGat 943.899 kb on - strand, within yihGat 943.899 kb on - strand, within yihGat 943.907 kb on + strand, within yihGat 943.907 kb on + strand, within yihGat 943.908 kb on - strand, within yihGat 943.919 kb on + strand, within yihGat 943.919 kb on + strand, within yihGat 943.920 kb on - strand, within yihGat 943.964 kb on + strand, within yihGat 944.031 kb on - strand, within yihGat 944.031 kb on - strand, within yihGat 944.031 kb on - strand, within yihGat 944.040 kb on - strand, within yihGat 944.050 kb on - strand, within yihGat 944.061 kb on + strand, within yihGat 944.061 kb on + strand, within yihGat 944.061 kb on + strand, within yihGat 944.062 kb on - strand, within yihGat 944.065 kb on + strand, within yihGat 944.065 kb on + strand, within yihGat 944.065 kb on + strand, within yihGat 944.066 kb on - strand, within yihGat 944.068 kb on + strand, within yihGat 944.068 kb on + strand, within yihGat 944.090 kb on + strand, within yihGat 944.091 kb on - strand, within yihGat 944.264 kb on - strand, within yihGat 944.271 kb on - strand, within yihGat 944.297 kb on + strand, within yihGat 944.298 kb on - strand, within yihGat 944.298 kb on - strand, within yihGat 944.298 kb on - strand, within yihGat 944.319 kb on - strand, within yihGat 944.339 kb on + strand, within yihGat 944.340 kb on - strand, within yihGat 944.340 kb on - strand, within yihGat 944.371 kb on + strand, within yihGat 944.371 kb on + strand, within yihGat 944.372 kb on - strand, within yihGat 944.372 kb on - strand, within yihGat 944.391 kb on - strand, within yihGat 944.404 kb on + strand, within yihGat 944.404 kb on + strand, within yihGat 944.416 kb on - strand, within yihGat 944.416 kb on - strand, within yihG

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Per-strain Table

Position Strand Gene LocusTag Fraction GB_Bas36
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943,285 - +0.5
943,379 + MCAODC_04655 0.47 -1.4
943,467 + -2.6
943,471 - -0.9
943,480 - -0.1
943,507 + -0.8
943,583 + +0.5
943,661 + -3.2
943,666 + -0.0
943,666 + -1.1
943,686 - +0.4
943,729 + yihG MCAODC_04660 0.14 +1.0
943,729 + yihG MCAODC_04660 0.14 +0.7
943,730 - yihG MCAODC_04660 0.14 -1.0
943,735 + yihG MCAODC_04660 0.15 -3.2
943,735 + yihG MCAODC_04660 0.15 +0.2
943,735 + yihG MCAODC_04660 0.15 -0.9
943,735 + yihG MCAODC_04660 0.15 -1.5
943,736 - yihG MCAODC_04660 0.15 +0.7
943,781 + yihG MCAODC_04660 0.20 -0.7
943,781 + yihG MCAODC_04660 0.20 +0.5
943,782 - yihG MCAODC_04660 0.20 -1.0
943,782 - yihG MCAODC_04660 0.20 +2.3
943,788 + yihG MCAODC_04660 0.21 -0.3
943,788 + yihG MCAODC_04660 0.21 +0.3
943,788 + yihG MCAODC_04660 0.21 +0.3
943,788 + yihG MCAODC_04660 0.21 -0.3
943,788 + yihG MCAODC_04660 0.21 -0.6
943,788 + yihG MCAODC_04660 0.21 -1.8
943,789 - yihG MCAODC_04660 0.21 -1.1
943,789 - yihG MCAODC_04660 0.21 -2.7
943,789 - yihG MCAODC_04660 0.21 -0.2
943,789 - yihG MCAODC_04660 0.21 -0.6
943,789 - yihG MCAODC_04660 0.21 -1.4
943,813 + yihG MCAODC_04660 0.23 -2.4
943,814 - yihG MCAODC_04660 0.23 -0.3
943,816 + yihG MCAODC_04660 0.24 -0.8
943,816 + yihG MCAODC_04660 0.24 +0.2
943,867 + yihG MCAODC_04660 0.29 -0.9
943,867 + yihG MCAODC_04660 0.29 -0.1
943,868 - yihG MCAODC_04660 0.29 -2.4
943,868 - yihG MCAODC_04660 0.29 -2.0
943,872 - yihG MCAODC_04660 0.30 -0.8
943,893 - yihG MCAODC_04660 0.32 +1.0
943,893 - yihG MCAODC_04660 0.32 +1.4
943,893 - yihG MCAODC_04660 0.32 +0.2
943,898 + yihG MCAODC_04660 0.32 +0.2
943,898 + yihG MCAODC_04660 0.32 -2.8
943,899 - yihG MCAODC_04660 0.32 +0.4
943,899 - yihG MCAODC_04660 0.32 -0.7
943,899 - yihG MCAODC_04660 0.32 -0.2
943,907 + yihG MCAODC_04660 0.33 -0.7
943,907 + yihG MCAODC_04660 0.33 +0.2
943,908 - yihG MCAODC_04660 0.33 +1.3
943,919 + yihG MCAODC_04660 0.35 -0.9
943,919 + yihG MCAODC_04660 0.35 -0.4
943,920 - yihG MCAODC_04660 0.35 -0.0
943,964 + yihG MCAODC_04660 0.39 -2.0
944,031 - yihG MCAODC_04660 0.47 -2.5
944,031 - yihG MCAODC_04660 0.47 -0.2
944,031 - yihG MCAODC_04660 0.47 -0.4
944,040 - yihG MCAODC_04660 0.48 +1.3
944,050 - yihG MCAODC_04660 0.49 +0.5
944,061 + yihG MCAODC_04660 0.50 +0.2
944,061 + yihG MCAODC_04660 0.50 +0.1
944,061 + yihG MCAODC_04660 0.50 +1.4
944,062 - yihG MCAODC_04660 0.50 +2.6
944,065 + yihG MCAODC_04660 0.50 -1.3
944,065 + yihG MCAODC_04660 0.50 +0.5
944,065 + yihG MCAODC_04660 0.50 +0.1
944,066 - yihG MCAODC_04660 0.50 -0.1
944,068 + yihG MCAODC_04660 0.51 +1.0
944,068 + yihG MCAODC_04660 0.51 -0.0
944,090 + yihG MCAODC_04660 0.53 -0.8
944,091 - yihG MCAODC_04660 0.53 +1.3
944,264 - yihG MCAODC_04660 0.72 -0.1
944,271 - yihG MCAODC_04660 0.72 +1.1
944,297 + yihG MCAODC_04660 0.75 -1.6
944,298 - yihG MCAODC_04660 0.75 -0.7
944,298 - yihG MCAODC_04660 0.75 +1.0
944,298 - yihG MCAODC_04660 0.75 -1.8
944,319 - yihG MCAODC_04660 0.77 -0.5
944,339 + yihG MCAODC_04660 0.80 -1.3
944,340 - yihG MCAODC_04660 0.80 -1.3
944,340 - yihG MCAODC_04660 0.80 -1.5
944,371 + yihG MCAODC_04660 0.83 +0.5
944,371 + yihG MCAODC_04660 0.83 +0.2
944,372 - yihG MCAODC_04660 0.83 +0.5
944,372 - yihG MCAODC_04660 0.83 +1.2
944,391 - yihG MCAODC_04660 0.85 +0.3
944,404 + yihG MCAODC_04660 0.87 -0.1
944,404 + yihG MCAODC_04660 0.87 -0.8
944,416 - yihG MCAODC_04660 0.88 -0.8
944,416 - yihG MCAODC_04660 0.88 +1.3

Or see this region's nucleotide sequence