Experiment: GB_Bas36
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yiiG and fdhD are separated by 153 nucleotides fdhD and fdnG are separated by 193 nucleotides
MCAODC_04445: yiiG - Uncharacterized protein YiiG, at 899,459 to 900,514
yiiG
MCAODC_04450: fdhD - formate dehydrogenase accessory sulfurtransferase FdhD, at 900,668 to 901,501
fdhD
MCAODC_04455: fdnG - formate dehydrogenase-N subunit alpha, at 901,695 to 904,745
fdnG
Position (kb) 900
901
902 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 899.896 kb on - strand, within yiiG at 900.001 kb on - strand, within yiiG at 900.001 kb on - strand, within yiiG at 900.001 kb on - strand, within yiiG at 900.022 kb on + strand, within yiiG at 900.051 kb on + strand, within yiiG at 900.052 kb on - strand, within yiiG at 900.153 kb on + strand, within yiiG at 900.154 kb on - strand, within yiiG at 900.154 kb on - strand, within yiiG at 900.220 kb on - strand, within yiiG at 900.251 kb on + strand, within yiiG at 900.252 kb on - strand, within yiiG at 900.252 kb on - strand, within yiiG at 900.261 kb on + strand, within yiiG at 900.261 kb on + strand, within yiiG at 900.261 kb on + strand, within yiiG at 900.262 kb on - strand, within yiiG at 900.262 kb on - strand, within yiiG at 900.262 kb on - strand, within yiiG at 900.273 kb on + strand, within yiiG at 900.273 kb on + strand, within yiiG at 900.273 kb on + strand, within yiiG at 900.273 kb on + strand, within yiiG at 900.274 kb on - strand, within yiiG at 900.274 kb on - strand, within yiiG at 900.341 kb on - strand, within yiiG at 900.371 kb on - strand, within yiiG at 900.371 kb on - strand, within yiiG at 900.531 kb on + strand at 900.697 kb on - strand at 900.728 kb on + strand at 900.729 kb on - strand at 900.743 kb on - strand at 900.761 kb on + strand, within fdhD at 900.762 kb on - strand, within fdhD at 900.762 kb on - strand, within fdhD at 900.762 kb on - strand, within fdhD at 900.994 kb on + strand, within fdhD at 900.994 kb on + strand, within fdhD at 900.995 kb on - strand, within fdhD at 901.040 kb on + strand, within fdhD at 901.040 kb on + strand, within fdhD at 901.040 kb on + strand, within fdhD at 901.040 kb on + strand, within fdhD at 901.041 kb on - strand, within fdhD at 901.041 kb on - strand, within fdhD at 901.114 kb on + strand, within fdhD at 901.114 kb on + strand, within fdhD at 901.115 kb on - strand, within fdhD at 901.115 kb on - strand, within fdhD at 901.115 kb on - strand, within fdhD at 901.115 kb on - strand, within fdhD at 901.134 kb on - strand, within fdhD at 901.187 kb on - strand, within fdhD at 901.187 kb on - strand, within fdhD at 901.229 kb on - strand, within fdhD at 901.274 kb on + strand, within fdhD at 901.274 kb on + strand, within fdhD at 901.275 kb on - strand, within fdhD at 901.275 kb on - strand, within fdhD at 901.275 kb on - strand, within fdhD at 901.275 kb on - strand, within fdhD at 901.277 kb on + strand, within fdhD at 901.278 kb on - strand, within fdhD at 901.311 kb on + strand, within fdhD at 901.312 kb on - strand, within fdhD at 901.362 kb on + strand, within fdhD at 901.363 kb on - strand, within fdhD at 901.363 kb on - strand, within fdhD at 901.401 kb on - strand, within fdhD at 901.415 kb on + strand, within fdhD at 901.416 kb on - strand, within fdhD at 901.416 kb on - strand, within fdhD at 901.459 kb on + strand at 901.539 kb on - strand at 901.539 kb on - strand at 901.544 kb on - strand at 901.806 kb on + strand at 901.807 kb on - strand at 901.808 kb on + strand at 901.809 kb on - strand at 901.835 kb on + strand at 901.839 kb on - strand at 901.839 kb on - strand at 901.839 kb on - strand at 901.848 kb on + strand at 901.848 kb on + strand at 901.848 kb on + strand at 901.848 kb on + strand at 901.848 kb on + strand at 901.848 kb on + strand at 901.849 kb on - strand at 901.849 kb on - strand at 901.849 kb on - strand at 901.858 kb on + strand at 901.859 kb on - strand at 901.878 kb on + strand at 901.878 kb on + strand at 901.879 kb on - strand at 901.879 kb on - strand at 901.916 kb on + strand at 901.916 kb on + strand at 901.916 kb on + strand at 901.917 kb on - strand at 901.917 kb on - strand at 901.917 kb on - strand at 902.051 kb on + strand, within fdnG at 902.052 kb on - strand, within fdnG at 902.052 kb on - strand, within fdnG at 902.127 kb on + strand, within fdnG at 902.128 kb on - strand, within fdnG at 902.128 kb on - strand, within fdnG at 902.128 kb on - strand, within fdnG at 902.128 kb on - strand, within fdnG at 902.221 kb on + strand, within fdnG at 902.249 kb on + strand, within fdnG at 902.250 kb on - strand, within fdnG at 902.297 kb on - strand, within fdnG at 902.487 kb on - strand, within fdnG
Per-strain Table
Position Strand Gene LocusTag Fraction GB_Bas36 remove 899,896 - yiiG MCAODC_04445 0.41 -1.6 900,001 - yiiG MCAODC_04445 0.51 +0.8 900,001 - yiiG MCAODC_04445 0.51 +0.1 900,001 - yiiG MCAODC_04445 0.51 -0.2 900,022 + yiiG MCAODC_04445 0.53 -0.2 900,051 + yiiG MCAODC_04445 0.56 +0.6 900,052 - yiiG MCAODC_04445 0.56 +1.0 900,153 + yiiG MCAODC_04445 0.66 +0.6 900,154 - yiiG MCAODC_04445 0.66 -1.9 900,154 - yiiG MCAODC_04445 0.66 +0.1 900,220 - yiiG MCAODC_04445 0.72 -0.2 900,251 + yiiG MCAODC_04445 0.75 +0.0 900,252 - yiiG MCAODC_04445 0.75 +0.7 900,252 - yiiG MCAODC_04445 0.75 +2.2 900,261 + yiiG MCAODC_04445 0.76 +0.4 900,261 + yiiG MCAODC_04445 0.76 +1.3 900,261 + yiiG MCAODC_04445 0.76 -0.1 900,262 - yiiG MCAODC_04445 0.76 -2.3 900,262 - yiiG MCAODC_04445 0.76 -0.2 900,262 - yiiG MCAODC_04445 0.76 -2.7 900,273 + yiiG MCAODC_04445 0.77 +0.3 900,273 + yiiG MCAODC_04445 0.77 -0.2 900,273 + yiiG MCAODC_04445 0.77 -0.8 900,273 + yiiG MCAODC_04445 0.77 +1.1 900,274 - yiiG MCAODC_04445 0.77 +2.1 900,274 - yiiG MCAODC_04445 0.77 -0.0 900,341 - yiiG MCAODC_04445 0.84 -0.2 900,371 - yiiG MCAODC_04445 0.86 -1.2 900,371 - yiiG MCAODC_04445 0.86 -1.3 900,531 + +0.9 900,697 - -2.2 900,728 + -2.3 900,729 - -0.4 900,743 - -0.3 900,761 + fdhD MCAODC_04450 0.11 -0.6 900,762 - fdhD MCAODC_04450 0.11 +0.4 900,762 - fdhD MCAODC_04450 0.11 -0.2 900,762 - fdhD MCAODC_04450 0.11 -1.0 900,994 + fdhD MCAODC_04450 0.39 -3.6 900,994 + fdhD MCAODC_04450 0.39 -1.9 900,995 - fdhD MCAODC_04450 0.39 -2.3 901,040 + fdhD MCAODC_04450 0.45 -3.8 901,040 + fdhD MCAODC_04450 0.45 -1.4 901,040 + fdhD MCAODC_04450 0.45 -1.2 901,040 + fdhD MCAODC_04450 0.45 -1.3 901,041 - fdhD MCAODC_04450 0.45 -2.9 901,041 - fdhD MCAODC_04450 0.45 -2.5 901,114 + fdhD MCAODC_04450 0.53 -2.5 901,114 + fdhD MCAODC_04450 0.53 -1.5 901,115 - fdhD MCAODC_04450 0.54 -1.3 901,115 - fdhD MCAODC_04450 0.54 -2.5 901,115 - fdhD MCAODC_04450 0.54 -2.1 901,115 - fdhD MCAODC_04450 0.54 -3.4 901,134 - fdhD MCAODC_04450 0.56 -0.7 901,187 - fdhD MCAODC_04450 0.62 -1.3 901,187 - fdhD MCAODC_04450 0.62 -1.7 901,229 - fdhD MCAODC_04450 0.67 -0.9 901,274 + fdhD MCAODC_04450 0.73 -2.9 901,274 + fdhD MCAODC_04450 0.73 -0.5 901,275 - fdhD MCAODC_04450 0.73 +0.5 901,275 - fdhD MCAODC_04450 0.73 -0.9 901,275 - fdhD MCAODC_04450 0.73 -1.3 901,275 - fdhD MCAODC_04450 0.73 -0.9 901,277 + fdhD MCAODC_04450 0.73 +0.7 901,278 - fdhD MCAODC_04450 0.73 +0.1 901,311 + fdhD MCAODC_04450 0.77 -0.6 901,312 - fdhD MCAODC_04450 0.77 -0.9 901,362 + fdhD MCAODC_04450 0.83 -1.0 901,363 - fdhD MCAODC_04450 0.83 -1.4 901,363 - fdhD MCAODC_04450 0.83 -2.3 901,401 - fdhD MCAODC_04450 0.88 -0.8 901,415 + fdhD MCAODC_04450 0.90 -1.8 901,416 - fdhD MCAODC_04450 0.90 -1.2 901,416 - fdhD MCAODC_04450 0.90 -1.9 901,459 + -1.7 901,539 - -1.3 901,539 - -0.7 901,544 - -0.6 901,806 + -0.4 901,807 - -1.5 901,808 + -0.7 901,809 - -0.8 901,835 + -2.5 901,839 - +0.2 901,839 - -1.5 901,839 - +0.4 901,848 + +0.2 901,848 + -0.9 901,848 + -2.3 901,848 + -0.9 901,848 + -0.1 901,848 + -0.4 901,849 - -3.3 901,849 - -1.1 901,849 - -3.9 901,858 + +0.1 901,859 - -2.7 901,878 + +0.3 901,878 + -1.9 901,879 - -2.1 901,879 - -2.3 901,916 + -2.6 901,916 + +0.1 901,916 + -0.0 901,917 - +1.8 901,917 - -1.3 901,917 - -1.4 902,051 + fdnG MCAODC_04455 0.12 -4.0 902,052 - fdnG MCAODC_04455 0.12 -1.7 902,052 - fdnG MCAODC_04455 0.12 +0.4 902,127 + fdnG MCAODC_04455 0.14 -0.6 902,128 - fdnG MCAODC_04455 0.14 -1.7 902,128 - fdnG MCAODC_04455 0.14 -1.4 902,128 - fdnG MCAODC_04455 0.14 -0.9 902,128 - fdnG MCAODC_04455 0.14 -0.6 902,221 + fdnG MCAODC_04455 0.17 -0.7 902,249 + fdnG MCAODC_04455 0.18 -2.2 902,250 - fdnG MCAODC_04455 0.18 -1.0 902,297 - fdnG MCAODC_04455 0.20 -0.9 902,487 - fdnG MCAODC_04455 0.26 -1.5
Or see this region's nucleotide sequence