Experiment: GB_Bas36
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fimD and fimD are separated by 174 nucleotides fimD and MCAODC_01535 are separated by 12 nucleotides
MCAODC_01525: fimD - fimbrial assembly protein, at 295,442 to 297,343
fimD
MCAODC_01530: fimD - fimbrial assembly protein, at 297,518 to 297,892
fimD
MCAODC_01535: MCAODC_01535 - fimbrial family protein, at 297,905 to 298,864
_01535
Position (kb) 297
298 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 296.582 kb on + strand, within fimD at 296.708 kb on + strand, within fimD at 296.710 kb on + strand, within fimD at 296.711 kb on - strand, within fimD at 296.722 kb on - strand, within fimD at 297.013 kb on + strand, within fimD at 297.232 kb on - strand at 297.233 kb on + strand at 297.233 kb on + strand at 297.309 kb on + strand at 297.309 kb on + strand at 297.320 kb on + strand at 297.361 kb on + strand at 297.522 kb on + strand at 297.665 kb on + strand, within fimD at 297.666 kb on - strand, within fimD at 297.668 kb on - strand, within fimD at 297.669 kb on + strand, within fimD at 297.880 kb on + strand at 298.001 kb on + strand, within MCAODC_01535 at 298.002 kb on - strand, within MCAODC_01535 at 298.003 kb on + strand, within MCAODC_01535 at 298.221 kb on + strand, within MCAODC_01535 at 298.632 kb on + strand, within MCAODC_01535 at 298.736 kb on + strand, within MCAODC_01535 at 298.766 kb on - strand, within MCAODC_01535 at 298.779 kb on + strand at 298.784 kb on - strand at 298.795 kb on + strand at 298.795 kb on + strand at 298.851 kb on + strand at 298.856 kb on + strand at 298.856 kb on + strand at 298.862 kb on + strand at 298.863 kb on - strand at 298.863 kb on - strand at 298.867 kb on + strand at 298.868 kb on - strand at 298.868 kb on - strand at 298.881 kb on + strand at 298.882 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction GB_Bas36 remove 296,582 + fimD MCAODC_01525 0.60 -0.6 296,708 + fimD MCAODC_01525 0.67 -0.3 296,710 + fimD MCAODC_01525 0.67 +0.6 296,711 - fimD MCAODC_01525 0.67 -0.4 296,722 - fimD MCAODC_01525 0.67 -0.8 297,013 + fimD MCAODC_01525 0.83 +0.3 297,232 - +2.0 297,233 + -2.0 297,233 + -0.2 297,309 + -0.5 297,309 + -1.7 297,320 + -1.1 297,361 + -1.6 297,522 + -2.0 297,665 + fimD MCAODC_01530 0.39 -3.0 297,666 - fimD MCAODC_01530 0.39 -0.5 297,668 - fimD MCAODC_01530 0.40 -0.5 297,669 + fimD MCAODC_01530 0.40 -1.9 297,880 + +0.5 298,001 + MCAODC_01535 0.10 -1.6 298,002 - MCAODC_01535 0.10 -0.3 298,003 + MCAODC_01535 0.10 -2.0 298,221 + MCAODC_01535 0.33 +0.6 298,632 + MCAODC_01535 0.76 -0.5 298,736 + MCAODC_01535 0.87 -2.0 298,766 - MCAODC_01535 0.90 +0.1 298,779 + -0.5 298,784 - +0.7 298,795 + -2.0 298,795 + +0.4 298,851 + -0.3 298,856 + -0.7 298,856 + -2.4 298,862 + -0.8 298,863 - +1.9 298,863 - -1.3 298,867 + -2.8 298,868 - -2.9 298,868 - -1.1 298,881 + -0.6 298,882 - +0.8
Or see this region's nucleotide sequence