Experiment: GB_Bas36
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yadS and erpA are separated by 46 nucleotides erpA and yadW overlap by 8 nucleotides yadW and clcA are separated by 23 nucleotides
MCAODC_00790: yadS - UPF0126 inner membrane protein YadS, at 135,387 to 136,010
yadS
MCAODC_00795: erpA - iron-sulfur cluster insertion protein ErpA, at 136,057 to 136,401
erpA
MCAODC_00800: yadW - Protein YadW, at 136,394 to 136,459
yadW
MCAODC_00805: clcA - H(+)/Cl(-) exchange transporter ClcA, at 136,483 to 137,904
clcA
Position (kb) 136
137 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 135.396 kb on + strand at 135.409 kb on + strand at 135.409 kb on + strand at 135.409 kb on + strand at 135.410 kb on - strand at 135.410 kb on - strand at 135.424 kb on + strand at 135.424 kb on + strand at 135.424 kb on + strand at 135.425 kb on - strand at 135.425 kb on - strand at 135.487 kb on + strand, within yadS at 135.501 kb on - strand, within yadS at 135.509 kb on - strand, within yadS at 135.596 kb on - strand, within yadS at 135.640 kb on + strand, within yadS at 135.640 kb on + strand, within yadS at 135.641 kb on - strand, within yadS at 135.749 kb on + strand, within yadS at 135.750 kb on - strand, within yadS at 135.761 kb on + strand, within yadS at 135.761 kb on + strand, within yadS at 135.848 kb on + strand, within yadS at 135.915 kb on - strand, within yadS at 135.937 kb on + strand, within yadS at 135.971 kb on + strand at 135.971 kb on + strand at 135.971 kb on + strand at 135.972 kb on - strand at 135.972 kb on - strand at 135.972 kb on - strand at 135.976 kb on + strand at 135.977 kb on - strand at 136.031 kb on - strand at 136.036 kb on - strand at 136.058 kb on + strand at 136.058 kb on + strand at 136.058 kb on + strand at 136.059 kb on - strand at 136.059 kb on - strand at 136.059 kb on - strand at 136.063 kb on - strand at 136.066 kb on - strand at 136.447 kb on + strand, within yadW at 136.448 kb on - strand, within yadW at 136.571 kb on + strand at 136.571 kb on + strand at 136.572 kb on - strand at 136.603 kb on + strand at 136.603 kb on + strand at 136.603 kb on + strand at 136.604 kb on - strand at 136.604 kb on - strand at 136.626 kb on + strand, within clcA at 136.627 kb on - strand, within clcA at 136.627 kb on - strand, within clcA at 136.650 kb on - strand, within clcA at 136.650 kb on - strand, within clcA at 136.650 kb on - strand, within clcA at 136.653 kb on + strand, within clcA at 136.702 kb on - strand, within clcA at 136.702 kb on - strand, within clcA at 136.734 kb on + strand, within clcA at 136.734 kb on + strand, within clcA at 136.734 kb on + strand, within clcA at 136.760 kb on + strand, within clcA at 136.870 kb on + strand, within clcA at 136.870 kb on + strand, within clcA at 136.870 kb on + strand, within clcA at 136.878 kb on + strand, within clcA at 136.900 kb on - strand, within clcA at 136.953 kb on + strand, within clcA at 137.041 kb on - strand, within clcA at 137.041 kb on - strand, within clcA at 137.043 kb on + strand, within clcA at 137.104 kb on - strand, within clcA at 137.124 kb on + strand, within clcA at 137.142 kb on - strand, within clcA at 137.154 kb on + strand, within clcA at 137.154 kb on + strand, within clcA at 137.154 kb on + strand, within clcA at 137.154 kb on + strand, within clcA at 137.155 kb on - strand, within clcA at 137.155 kb on - strand, within clcA at 137.155 kb on - strand, within clcA at 137.155 kb on - strand, within clcA at 137.208 kb on + strand, within clcA at 137.223 kb on + strand, within clcA at 137.223 kb on + strand, within clcA at 137.223 kb on + strand, within clcA at 137.224 kb on - strand, within clcA at 137.224 kb on - strand, within clcA at 137.224 kb on - strand, within clcA at 137.224 kb on - strand, within clcA at 137.224 kb on - strand, within clcA at 137.224 kb on - strand, within clcA at 137.235 kb on + strand, within clcA at 137.235 kb on + strand, within clcA at 137.235 kb on + strand, within clcA at 137.236 kb on - strand, within clcA at 137.236 kb on - strand, within clcA at 137.248 kb on - strand, within clcA at 137.248 kb on - strand, within clcA at 137.252 kb on - strand, within clcA at 137.274 kb on + strand, within clcA at 137.274 kb on + strand, within clcA at 137.274 kb on + strand, within clcA at 137.275 kb on - strand, within clcA at 137.275 kb on - strand, within clcA at 137.276 kb on + strand, within clcA at 137.276 kb on + strand, within clcA at 137.305 kb on - strand, within clcA at 137.307 kb on + strand, within clcA at 137.308 kb on - strand, within clcA at 137.379 kb on + strand, within clcA at 137.379 kb on + strand, within clcA at 137.380 kb on - strand, within clcA at 137.436 kb on + strand, within clcA at 137.436 kb on + strand, within clcA
Per-strain Table
Position Strand Gene LocusTag Fraction GB_Bas36 remove 135,396 + +1.5 135,409 + -0.3 135,409 + +0.2 135,409 + +0.5 135,410 - +1.1 135,410 - -0.7 135,424 + +1.0 135,424 + -2.1 135,424 + -1.6 135,425 - -0.6 135,425 - -0.8 135,487 + yadS MCAODC_00790 0.16 +0.6 135,501 - yadS MCAODC_00790 0.18 +1.4 135,509 - yadS MCAODC_00790 0.20 -0.0 135,596 - yadS MCAODC_00790 0.33 +0.3 135,640 + yadS MCAODC_00790 0.41 +0.8 135,640 + yadS MCAODC_00790 0.41 -1.4 135,641 - yadS MCAODC_00790 0.41 +0.1 135,749 + yadS MCAODC_00790 0.58 -0.1 135,750 - yadS MCAODC_00790 0.58 -1.8 135,761 + yadS MCAODC_00790 0.60 +1.3 135,761 + yadS MCAODC_00790 0.60 +0.3 135,848 + yadS MCAODC_00790 0.74 -0.2 135,915 - yadS MCAODC_00790 0.85 -1.4 135,937 + yadS MCAODC_00790 0.88 -0.3 135,971 + -0.9 135,971 + +1.0 135,971 + -0.2 135,972 - +0.1 135,972 - -0.5 135,972 - +0.4 135,976 + -0.8 135,977 - -0.8 136,031 - -1.6 136,036 - -0.2 136,058 + +0.8 136,058 + -1.0 136,058 + -0.7 136,059 - +0.6 136,059 - -0.7 136,059 - -0.5 136,063 - +0.5 136,066 - -1.5 136,447 + yadW MCAODC_00800 0.80 -1.9 136,448 - yadW MCAODC_00800 0.82 -1.6 136,571 + -0.7 136,571 + -0.4 136,572 - -1.8 136,603 + -0.2 136,603 + -0.6 136,603 + -0.8 136,604 - -0.9 136,604 - +0.6 136,626 + clcA MCAODC_00805 0.10 -0.9 136,627 - clcA MCAODC_00805 0.10 -0.3 136,627 - clcA MCAODC_00805 0.10 -0.2 136,650 - clcA MCAODC_00805 0.12 -1.6 136,650 - clcA MCAODC_00805 0.12 +0.9 136,650 - clcA MCAODC_00805 0.12 +0.4 136,653 + clcA MCAODC_00805 0.12 +1.3 136,702 - clcA MCAODC_00805 0.15 -0.7 136,702 - clcA MCAODC_00805 0.15 -2.2 136,734 + clcA MCAODC_00805 0.18 +0.5 136,734 + clcA MCAODC_00805 0.18 +0.2 136,734 + clcA MCAODC_00805 0.18 -2.7 136,760 + clcA MCAODC_00805 0.19 -1.0 136,870 + clcA MCAODC_00805 0.27 -1.5 136,870 + clcA MCAODC_00805 0.27 -0.1 136,870 + clcA MCAODC_00805 0.27 -0.0 136,878 + clcA MCAODC_00805 0.28 -0.7 136,900 - clcA MCAODC_00805 0.29 +0.5 136,953 + clcA MCAODC_00805 0.33 +0.9 137,041 - clcA MCAODC_00805 0.39 +1.0 137,041 - clcA MCAODC_00805 0.39 -0.9 137,043 + clcA MCAODC_00805 0.39 -1.7 137,104 - clcA MCAODC_00805 0.44 +0.6 137,124 + clcA MCAODC_00805 0.45 -2.2 137,142 - clcA MCAODC_00805 0.46 -0.0 137,154 + clcA MCAODC_00805 0.47 +1.4 137,154 + clcA MCAODC_00805 0.47 +0.1 137,154 + clcA MCAODC_00805 0.47 +2.7 137,154 + clcA MCAODC_00805 0.47 -1.1 137,155 - clcA MCAODC_00805 0.47 +0.3 137,155 - clcA MCAODC_00805 0.47 -0.1 137,155 - clcA MCAODC_00805 0.47 -0.5 137,155 - clcA MCAODC_00805 0.47 +0.5 137,208 + clcA MCAODC_00805 0.51 -0.4 137,223 + clcA MCAODC_00805 0.52 +0.1 137,223 + clcA MCAODC_00805 0.52 -1.4 137,223 + clcA MCAODC_00805 0.52 -1.9 137,224 - clcA MCAODC_00805 0.52 +0.0 137,224 - clcA MCAODC_00805 0.52 +1.0 137,224 - clcA MCAODC_00805 0.52 +1.0 137,224 - clcA MCAODC_00805 0.52 -0.4 137,224 - clcA MCAODC_00805 0.52 +0.0 137,224 - clcA MCAODC_00805 0.52 -1.0 137,235 + clcA MCAODC_00805 0.53 -1.1 137,235 + clcA MCAODC_00805 0.53 -0.8 137,235 + clcA MCAODC_00805 0.53 +0.9 137,236 - clcA MCAODC_00805 0.53 -0.3 137,236 - clcA MCAODC_00805 0.53 -0.1 137,248 - clcA MCAODC_00805 0.54 -2.5 137,248 - clcA MCAODC_00805 0.54 +0.5 137,252 - clcA MCAODC_00805 0.54 -1.1 137,274 + clcA MCAODC_00805 0.56 -0.6 137,274 + clcA MCAODC_00805 0.56 -2.9 137,274 + clcA MCAODC_00805 0.56 -0.0 137,275 - clcA MCAODC_00805 0.56 +1.7 137,275 - clcA MCAODC_00805 0.56 -0.5 137,276 + clcA MCAODC_00805 0.56 +0.7 137,276 + clcA MCAODC_00805 0.56 +0.7 137,305 - clcA MCAODC_00805 0.58 +1.1 137,307 + clcA MCAODC_00805 0.58 +0.2 137,308 - clcA MCAODC_00805 0.58 +1.2 137,379 + clcA MCAODC_00805 0.63 +0.3 137,379 + clcA MCAODC_00805 0.63 +0.5 137,380 - clcA MCAODC_00805 0.63 -0.1 137,436 + clcA MCAODC_00805 0.67 +2.3 137,436 + clcA MCAODC_00805 0.67 +0.5
Or see this region's nucleotide sequence