Strain Fitness in Escherichia coli ECRC98 around JDDGAC_29925

Experiment: WM_TP15

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	WM_TP15
10,720	+	xerD	JDDGAC_29915	0.22	+0.7
10,720	+	xerD	JDDGAC_29915	0.22	+0.6
10,721	-	xerD	JDDGAC_29915	0.22	-0.7
10,721	-	xerD	JDDGAC_29915	0.22	+1.5
10,721	-	xerD	JDDGAC_29915	0.22	-2.2
10,722	+	xerD	JDDGAC_29915	0.23	+1.5
10,744	-	xerD	JDDGAC_29915	0.26	-0.9
10,744	-	xerD	JDDGAC_29915	0.26	-0.1
10,744	-	xerD	JDDGAC_29915	0.26	+0.4
10,744	-	xerD	JDDGAC_29915	0.26	-0.2
10,744	-	xerD	JDDGAC_29915	0.26	-0.1
10,920	+	xerD	JDDGAC_29915	0.49	+0.5
10,920	+	xerD	JDDGAC_29915	0.49	-0.7
10,921	-	xerD	JDDGAC_29915	0.49	+1.3
10,922	+	xerD	JDDGAC_29915	0.50	+0.3
10,922	+	xerD	JDDGAC_29915	0.50	+0.5
10,922	+	xerD	JDDGAC_29915	0.50	-0.9
10,922	+	xerD	JDDGAC_29915	0.50	+1.5
10,922	+	xerD	JDDGAC_29915	0.50	-0.4
10,923	-	xerD	JDDGAC_29915	0.50	+0.4
10,923	-	xerD	JDDGAC_29915	0.50	-0.1
10,923	-	xerD	JDDGAC_29915	0.50	-1.4
10,923	-	xerD	JDDGAC_29915	0.50	+0.6
10,923	-	xerD	JDDGAC_29915	0.50	-1.5
10,923	-	xerD	JDDGAC_29915	0.50	-0.6
10,927	+	xerD	JDDGAC_29915	0.50	-0.9
10,927	+	xerD	JDDGAC_29915	0.50	+0.4
10,928	-	xerD	JDDGAC_29915	0.50	+2.2
10,928	-	xerD	JDDGAC_29915	0.50	-0.4
11,101	+	xerD	JDDGAC_29915	0.74	-0.1
11,101	+	xerD	JDDGAC_29915	0.74	-0.6
11,101	+	xerD	JDDGAC_29915	0.74	+0.4
11,101	+	xerD	JDDGAC_29915	0.74	-0.6
11,101	+	xerD	JDDGAC_29915	0.74	-0.3
11,101	+	xerD	JDDGAC_29915	0.74	-0.2
11,101	+	xerD	JDDGAC_29915	0.74	-0.8
11,101	+	xerD	JDDGAC_29915	0.74	-0.2
11,102	-	xerD	JDDGAC_29915	0.74	-0.8
11,102	-	xerD	JDDGAC_29915	0.74	+1.0
11,102	-	xerD	JDDGAC_29915	0.74	-1.1
11,102	-	xerD	JDDGAC_29915	0.74	+0.6
11,102	-	xerD	JDDGAC_29915	0.74	-0.1
11,102	-	xerD	JDDGAC_29915	0.74	-0.0
11,102	-	xerD	JDDGAC_29915	0.74	-0.2
11,103	+	xerD	JDDGAC_29915	0.74	+1.0
11,104	-	xerD	JDDGAC_29915	0.74	-0.1
11,104	-	xerD	JDDGAC_29915	0.74	+0.7
11,112	+	xerD	JDDGAC_29915	0.75	-3.3
11,112	+	xerD	JDDGAC_29915	0.75	-1.6
11,112	+	xerD	JDDGAC_29915	0.75	-0.3
11,112	+	xerD	JDDGAC_29915	0.75	+0.4
11,112	+	xerD	JDDGAC_29915	0.75	-0.8
11,112	+	xerD	JDDGAC_29915	0.75	+0.6
11,112	+	xerD	JDDGAC_29915	0.75	+0.6
11,113	-	xerD	JDDGAC_29915	0.75	+0.5
11,113	-	xerD	JDDGAC_29915	0.75	+0.5
11,120	-	xerD	JDDGAC_29915	0.76	-0.4
11,188	+	xerD	JDDGAC_29915	0.85	-3.0
11,189	-	xerD	JDDGAC_29915	0.86	+0.2
11,190	+	xerD	JDDGAC_29915	0.86	-0.6
11,191	-	xerD	JDDGAC_29915	0.86	-0.1
11,274	+				-0.6
11,274	+				-0.3
11,313	+				-1.3
11,315	+				+1.1
11,317	+				+0.4
11,317	+				-0.3
11,342	+				-1.0
11,343	-				+0.7
11,343	-				+0.1
11,348	-				-1.9
11,362	-				-1.2
11,364	-				-0.3
11,365	+				-0.2
11,391	+				-0.6
11,392	-				+0.6
11,437	+		JDDGAC_29920	0.43	+1.3
11,437	+		JDDGAC_29920	0.43	-0.1
11,465	-		JDDGAC_29920	0.67	-0.5
11,531	-				+0.7
11,575	+				-0.3
11,706	-	repA	JDDGAC_29925	0.13	-0.3
11,788	+	repA	JDDGAC_29925	0.21	+1.3
11,854	-	repA	JDDGAC_29925	0.28	-0.0
11,928	+	repA	JDDGAC_29925	0.36	-0.7
11,931	-	repA	JDDGAC_29925	0.36	-0.5
11,931	-	repA	JDDGAC_29925	0.36	+3.3
11,939	-	repA	JDDGAC_29925	0.37	+1.4
11,975	+	repA	JDDGAC_29925	0.40	-0.2
12,073	+	repA	JDDGAC_29925	0.50	-0.1
12,074	-	repA	JDDGAC_29925	0.51	+0.4
12,074	-	repA	JDDGAC_29925	0.51	-0.3
12,076	+	repA	JDDGAC_29925	0.51	-0.2
12,087	+	repA	JDDGAC_29925	0.52	+0.7
12,087	+	repA	JDDGAC_29925	0.52	-0.8
12,104	-	repA	JDDGAC_29925	0.54	+0.4
12,217	-	repA	JDDGAC_29925	0.65	-0.2
12,219	-	repA	JDDGAC_29925	0.65	+0.9
12,270	+	repA	JDDGAC_29925	0.71	+0.3
12,429	-	repA	JDDGAC_29925	0.87	+0.8
12,455	+	repA	JDDGAC_29925	0.89	+0.6
12,513	-				+0.3
12,551	+				-0.6
12,552	-				+0.0
12,552	-				+0.1
12,631	-				+0.2
12,631	-				+0.8
12,661	-				+0.1
12,689	+				-0.5
12,690	-				+1.4
12,693	+				-0.7
12,694	-				-0.3
12,738	+				+0.1
12,739	-				+0.6
12,739	-				-0.4
12,739	-				-0.5
12,739	-				-2.3
12,783	+				-0.2
12,790	+				-0.1
12,812	-				-1.1
12,931	+				-1.0
12,954	+				-1.3
12,954	+				-0.3
12,955	-				+0.3
12,955	-				+0.1
12,955	-				-0.1
12,967	-				+0.1
12,968	+				+0.1
12,968	+				-0.2
12,968	+				+0.3
12,969	-				-3.9
12,969	-				-0.6
12,992	-		JDDGAC_29930	0.13	+0.2
13,070	-		JDDGAC_29930	0.52	+0.5
13,070	-		JDDGAC_29930	0.52	-0.4
13,070	-		JDDGAC_29930	0.52	+0.4
13,070	-		JDDGAC_29930	0.52	+0.1
13,149	+				-0.8
13,149	+				+0.6
13,155	+				-2.8
13,155	+				+0.7
13,155	+				+0.5
13,155	+				+0.5
13,156	-				+0.3
13,240	-		JDDGAC_29935	0.13	-0.2
13,242	+		JDDGAC_29935	0.13	+0.7
13,242	+		JDDGAC_29935	0.13	-2.2
13,243	-		JDDGAC_29935	0.13	+0.5
13,265	-		JDDGAC_29935	0.17	+0.2
13,265	-		JDDGAC_29935	0.17	+0.1
13,337	+		JDDGAC_29935	0.28	-0.2
13,338	-		JDDGAC_29935	0.28	-0.1
13,402	-		JDDGAC_29935	0.39	-0.7
13,402	-		JDDGAC_29935	0.39	+0.4
13,405	-		JDDGAC_29935	0.39	+1.8
13,458	-		JDDGAC_29935	0.48	-0.6
13,499	+		JDDGAC_29935	0.54	-0.5
13,500	-		JDDGAC_29935	0.54	-1.5
13,516	+		JDDGAC_29935	0.57	+0.1
13,517	-		JDDGAC_29935	0.57	+0.7