Experiment: WM_JK36
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tssA and hcp overlap by 35 nucleotides hcp and MCAODC_00450 are separated by 20 nucleotides MCAODC_00450 and MCAODC_00455 are separated by 109 nucleotides MCAODC_00455 and MCAODC_00460 are separated by 2 nucleotides
MCAODC_00440: tssA - Type VI secretion system protein TssA, at 71,820 to 73,229
tssA
MCAODC_00445: hcp - type VI secretion system tube protein Hcp, at 73,195 to 73,674
hcp
MCAODC_00450: MCAODC_00450 - hypothetical protein, at 73,695 to 73,886
_00450
MCAODC_00455: MCAODC_00455 - Peptidoglycan-binding protein LysM, at 73,996 to 74,592
_00455
MCAODC_00460: MCAODC_00460 - hypothetical protein, at 74,595 to 75,044
_00460
Position (kb) 73
74 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 72.223 kb on - strand, within tssA at 72.309 kb on + strand, within tssA at 72.314 kb on + strand, within tssA at 72.330 kb on - strand, within tssA at 72.533 kb on + strand, within tssA at 72.539 kb on - strand, within tssA at 72.628 kb on + strand, within tssA at 72.629 kb on - strand, within tssA at 72.693 kb on + strand, within tssA at 72.694 kb on - strand, within tssA at 72.694 kb on - strand, within tssA at 72.722 kb on + strand, within tssA at 72.723 kb on - strand, within tssA at 72.723 kb on - strand, within tssA at 72.723 kb on - strand, within tssA at 72.733 kb on + strand, within tssA at 72.895 kb on + strand, within tssA at 72.895 kb on + strand, within tssA at 72.896 kb on - strand, within tssA at 72.896 kb on - strand, within tssA at 72.896 kb on - strand, within tssA at 72.896 kb on - strand, within tssA at 72.896 kb on - strand, within tssA at 72.940 kb on + strand, within tssA at 72.951 kb on + strand, within tssA at 72.951 kb on + strand, within tssA at 72.951 kb on + strand, within tssA at 72.951 kb on + strand, within tssA at 72.952 kb on - strand, within tssA at 72.952 kb on - strand, within tssA at 72.952 kb on - strand, within tssA at 72.953 kb on + strand, within tssA at 72.954 kb on - strand, within tssA at 73.079 kb on + strand, within tssA at 73.103 kb on - strand at 73.127 kb on + strand at 73.214 kb on + strand at 73.215 kb on - strand at 73.230 kb on + strand at 73.393 kb on - strand, within hcp at 73.509 kb on - strand, within hcp at 73.542 kb on + strand, within hcp at 73.542 kb on + strand, within hcp at 73.614 kb on - strand, within hcp at 73.982 kb on - strand at 73.985 kb on + strand at 74.306 kb on + strand, within MCAODC_00455 at 74.307 kb on - strand, within MCAODC_00455 at 74.469 kb on + strand, within MCAODC_00455 at 74.512 kb on + strand, within MCAODC_00455 at 74.563 kb on - strand at 74.637 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_JK36 remove 72,223 - tssA MCAODC_00440 0.29 -0.5 72,309 + tssA MCAODC_00440 0.35 -0.3 72,314 + tssA MCAODC_00440 0.35 -0.1 72,330 - tssA MCAODC_00440 0.36 -0.5 72,533 + tssA MCAODC_00440 0.51 +0.5 72,539 - tssA MCAODC_00440 0.51 -2.1 72,628 + tssA MCAODC_00440 0.57 +0.4 72,629 - tssA MCAODC_00440 0.57 -0.3 72,693 + tssA MCAODC_00440 0.62 -0.2 72,694 - tssA MCAODC_00440 0.62 -0.5 72,694 - tssA MCAODC_00440 0.62 +0.3 72,722 + tssA MCAODC_00440 0.64 -2.7 72,723 - tssA MCAODC_00440 0.64 +0.4 72,723 - tssA MCAODC_00440 0.64 +1.8 72,723 - tssA MCAODC_00440 0.64 -1.4 72,733 + tssA MCAODC_00440 0.65 -0.3 72,895 + tssA MCAODC_00440 0.76 -0.1 72,895 + tssA MCAODC_00440 0.76 +1.5 72,896 - tssA MCAODC_00440 0.76 +1.0 72,896 - tssA MCAODC_00440 0.76 -0.5 72,896 - tssA MCAODC_00440 0.76 +0.2 72,896 - tssA MCAODC_00440 0.76 +0.1 72,896 - tssA MCAODC_00440 0.76 +0.4 72,940 + tssA MCAODC_00440 0.79 -1.0 72,951 + tssA MCAODC_00440 0.80 -0.0 72,951 + tssA MCAODC_00440 0.80 -0.4 72,951 + tssA MCAODC_00440 0.80 -0.4 72,951 + tssA MCAODC_00440 0.80 +0.1 72,952 - tssA MCAODC_00440 0.80 +0.0 72,952 - tssA MCAODC_00440 0.80 +1.0 72,952 - tssA MCAODC_00440 0.80 -0.2 72,953 + tssA MCAODC_00440 0.80 -0.4 72,954 - tssA MCAODC_00440 0.80 -0.3 73,079 + tssA MCAODC_00440 0.89 +0.4 73,103 - +0.6 73,127 + -0.6 73,214 + -1.0 73,215 - -0.3 73,230 + -0.4 73,393 - hcp MCAODC_00445 0.41 +0.3 73,509 - hcp MCAODC_00445 0.65 +2.3 73,542 + hcp MCAODC_00445 0.72 -1.8 73,542 + hcp MCAODC_00445 0.72 -3.4 73,614 - hcp MCAODC_00445 0.87 -2.2 73,982 - -0.1 73,985 + +0.7 74,306 + MCAODC_00455 0.52 +0.8 74,307 - MCAODC_00455 0.52 -0.6 74,469 + MCAODC_00455 0.79 -0.5 74,512 + MCAODC_00455 0.86 +0.5 74,563 - +0.2 74,637 - -1.1
Or see this region's nucleotide sequence