Experiment: Control_ECRC101
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nleG-3 and MCAODC_03485 are separated by 111 nucleotides MCAODC_03485 and MCAODC_03490 are separated by 1 nucleotides MCAODC_03490 and lomR are separated by 64 nucleotides lomR and MCAODC_03500 are separated by 67 nucleotides
MCAODC_03480: nleG-3 - T3SS effector NleG family protein, at 702,323 to 702,895
nleG-3
MCAODC_03485: MCAODC_03485 - phage tail protein, at 703,007 to 703,276
_03485
MCAODC_03490: MCAODC_03490 - phage tail protein, at 703,278 to 704,591
_03490
MCAODC_03495: lomR - Ail/Lom family protein, at 704,656 to 705,255
lomR
MCAODC_03500: MCAODC_03500 - phage tail protein, at 705,323 to 705,976
_03500
Position (kb) 703
704
705 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 702.313 kb on - strand at 702.535 kb on + strand, within nleG-3 at 702.653 kb on + strand, within nleG-3 at 702.676 kb on + strand, within nleG-3 at 702.688 kb on + strand, within nleG-3 at 702.758 kb on - strand, within nleG-3 at 702.758 kb on - strand, within nleG-3 at 702.767 kb on - strand, within nleG-3 at 702.767 kb on - strand, within nleG-3 at 702.768 kb on + strand, within nleG-3 at 702.768 kb on + strand, within nleG-3 at 702.768 kb on + strand, within nleG-3 at 702.769 kb on - strand, within nleG-3 at 702.769 kb on - strand, within nleG-3 at 702.769 kb on - strand, within nleG-3 at 702.769 kb on - strand, within nleG-3 at 702.825 kb on - strand, within nleG-3 at 702.876 kb on + strand at 702.876 kb on + strand at 702.876 kb on + strand at 702.876 kb on + strand at 702.876 kb on + strand at 702.876 kb on + strand at 702.877 kb on - strand at 702.877 kb on - strand at 702.877 kb on - strand at 702.877 kb on - strand at 702.877 kb on - strand at 702.877 kb on - strand at 702.882 kb on - strand at 702.882 kb on - strand at 702.882 kb on - strand at 702.884 kb on + strand at 702.885 kb on - strand at 702.911 kb on + strand at 702.917 kb on + strand at 702.917 kb on + strand at 704.185 kb on - strand, within MCAODC_03490 at 705.382 kb on + strand at 705.562 kb on + strand, within MCAODC_03500 at 705.562 kb on + strand, within MCAODC_03500 at 705.562 kb on + strand, within MCAODC_03500 at 705.562 kb on + strand, within MCAODC_03500 at 705.568 kb on + strand, within MCAODC_03500
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101 remove 702,313 - +0.5 702,535 + nleG-3 MCAODC_03480 0.37 +2.3 702,653 + nleG-3 MCAODC_03480 0.58 +2.9 702,676 + nleG-3 MCAODC_03480 0.62 -0.3 702,688 + nleG-3 MCAODC_03480 0.64 +0.2 702,758 - nleG-3 MCAODC_03480 0.76 -0.3 702,758 - nleG-3 MCAODC_03480 0.76 +3.9 702,767 - nleG-3 MCAODC_03480 0.77 +0.1 702,767 - nleG-3 MCAODC_03480 0.77 +0.0 702,768 + nleG-3 MCAODC_03480 0.78 +0.9 702,768 + nleG-3 MCAODC_03480 0.78 +0.4 702,768 + nleG-3 MCAODC_03480 0.78 +0.9 702,769 - nleG-3 MCAODC_03480 0.78 +0.6 702,769 - nleG-3 MCAODC_03480 0.78 -0.1 702,769 - nleG-3 MCAODC_03480 0.78 -1.6 702,769 - nleG-3 MCAODC_03480 0.78 -0.3 702,825 - nleG-3 MCAODC_03480 0.88 +1.2 702,876 + -0.5 702,876 + +0.6 702,876 + +1.1 702,876 + -1.4 702,876 + -0.6 702,876 + +0.2 702,877 - -1.6 702,877 - -0.0 702,877 - +0.2 702,877 - -0.1 702,877 - +0.7 702,877 - -0.8 702,882 - +0.1 702,882 - +1.1 702,882 - -0.0 702,884 + -0.2 702,885 - -2.3 702,911 + +1.0 702,917 + -0.8 702,917 + +0.7 704,185 - MCAODC_03490 0.69 -0.8 705,382 + -0.9 705,562 + MCAODC_03500 0.37 -2.4 705,562 + MCAODC_03500 0.37 -0.1 705,562 + MCAODC_03500 0.37 +0.1 705,562 + MCAODC_03500 0.37 -0.1 705,568 + MCAODC_03500 0.37 +0.3
Or see this region's nucleotide sequence