Experiment: D-Mannitol (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00720 and PFR28_00721 are separated by 145 nucleotides PFR28_00721 and PFR28_00722 are separated by 110 nucleotides PFR28_00722 and PFR28_00723 are separated by 286 nucleotides
PFR28_00720: PFR28_00720 - hypothetical protein, at 759,631 to 760,005
_00720
PFR28_00721: PFR28_00721 - hypothetical protein, at 760,151 to 760,438
_00721
PFR28_00722: PFR28_00722 - hypothetical protein, at 760,549 to 761,022
_00722
PFR28_00723: PFR28_00723 - Dipeptidyl aminopeptidase BI, at 761,309 to 763,363
_00723
Position (kb) 760
761
762 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 759.725 kb on + strand, within PFR28_00720 at 759.725 kb on + strand, within PFR28_00720 at 759.725 kb on + strand, within PFR28_00720 at 759.726 kb on - strand, within PFR28_00720 at 759.767 kb on + strand, within PFR28_00720 at 759.767 kb on + strand, within PFR28_00720 at 759.767 kb on + strand, within PFR28_00720 at 759.768 kb on - strand, within PFR28_00720 at 759.768 kb on - strand, within PFR28_00720 at 759.768 kb on - strand, within PFR28_00720 at 759.768 kb on - strand, within PFR28_00720 at 759.768 kb on - strand, within PFR28_00720 at 759.768 kb on - strand, within PFR28_00720 at 759.899 kb on + strand, within PFR28_00720 at 759.899 kb on + strand, within PFR28_00720 at 759.899 kb on + strand, within PFR28_00720 at 759.899 kb on + strand, within PFR28_00720 at 759.900 kb on - strand, within PFR28_00720 at 760.049 kb on + strand at 760.049 kb on + strand at 760.050 kb on - strand at 760.117 kb on + strand at 760.118 kb on - strand at 760.118 kb on - strand at 760.118 kb on - strand at 760.123 kb on + strand at 760.123 kb on + strand at 760.123 kb on + strand at 760.123 kb on + strand at 760.123 kb on + strand at 760.123 kb on + strand at 760.123 kb on + strand at 760.123 kb on + strand at 760.123 kb on + strand at 760.123 kb on + strand at 760.123 kb on + strand at 760.123 kb on + strand at 760.123 kb on + strand at 760.123 kb on + strand at 760.123 kb on + strand at 760.124 kb on - strand at 760.124 kb on - strand at 760.124 kb on - strand at 760.124 kb on - strand at 760.124 kb on - strand at 760.124 kb on - strand at 760.124 kb on - strand at 760.124 kb on - strand at 760.124 kb on - strand at 760.124 kb on - strand at 760.124 kb on - strand at 760.124 kb on - strand at 760.124 kb on - strand at 760.124 kb on - strand at 760.124 kb on - strand at 760.124 kb on - strand at 760.124 kb on - strand at 760.124 kb on - strand at 760.124 kb on - strand at 760.124 kb on - strand at 760.124 kb on - strand at 760.124 kb on - strand at 760.124 kb on - strand at 760.134 kb on + strand at 760.134 kb on + strand at 760.188 kb on + strand, within PFR28_00721 at 760.270 kb on + strand, within PFR28_00721 at 760.271 kb on - strand, within PFR28_00721 at 760.271 kb on - strand, within PFR28_00721 at 760.420 kb on + strand at 760.421 kb on - strand at 760.421 kb on - strand at 760.469 kb on + strand at 760.470 kb on - strand at 760.507 kb on + strand at 760.550 kb on + strand at 760.550 kb on + strand at 760.550 kb on + strand at 760.551 kb on - strand at 760.551 kb on - strand at 760.551 kb on - strand at 760.551 kb on - strand at 760.551 kb on - strand at 760.920 kb on - strand, within PFR28_00722 at 760.920 kb on - strand, within PFR28_00722 at 761.005 kb on + strand at 761.005 kb on + strand at 761.005 kb on + strand at 761.006 kb on - strand at 761.158 kb on + strand at 761.158 kb on + strand at 761.158 kb on + strand at 761.158 kb on + strand at 761.158 kb on + strand at 761.158 kb on + strand at 761.158 kb on + strand at 761.158 kb on + strand at 761.159 kb on - strand at 761.159 kb on - strand at 761.159 kb on - strand at 761.159 kb on - strand at 761.159 kb on - strand at 761.159 kb on - strand at 761.159 kb on - strand at 761.159 kb on - strand at 761.159 kb on - strand at 761.160 kb on + strand at 761.180 kb on + strand at 761.180 kb on + strand at 761.180 kb on + strand at 761.181 kb on - strand at 761.214 kb on + strand at 761.214 kb on + strand at 761.214 kb on + strand at 761.214 kb on + strand at 761.214 kb on + strand at 761.215 kb on - strand at 761.215 kb on - strand at 761.215 kb on - strand at 761.236 kb on + strand at 761.236 kb on + strand at 761.236 kb on + strand at 761.236 kb on + strand at 761.236 kb on + strand at 761.283 kb on - strand at 761.283 kb on - strand at 761.283 kb on - strand at 761.343 kb on + strand at 761.344 kb on - strand at 761.354 kb on + strand at 761.355 kb on - strand at 761.485 kb on - strand at 761.485 kb on - strand at 761.485 kb on - strand at 761.565 kb on + strand, within PFR28_00723 at 761.583 kb on + strand, within PFR28_00723 at 761.583 kb on + strand, within PFR28_00723 at 761.584 kb on - strand, within PFR28_00723 at 761.584 kb on - strand, within PFR28_00723 at 761.903 kb on + strand, within PFR28_00723 at 761.903 kb on + strand, within PFR28_00723 at 761.903 kb on + strand, within PFR28_00723 at 761.903 kb on + strand, within PFR28_00723 at 761.903 kb on + strand, within PFR28_00723 at 761.904 kb on - strand, within PFR28_00723 at 761.904 kb on - strand, within PFR28_00723 at 762.000 kb on + strand, within PFR28_00723 at 762.000 kb on + strand, within PFR28_00723 at 762.000 kb on + strand, within PFR28_00723 at 762.000 kb on + strand, within PFR28_00723 at 762.000 kb on + strand, within PFR28_00723 at 762.000 kb on + strand, within PFR28_00723 at 762.001 kb on - strand, within PFR28_00723 at 762.001 kb on - strand, within PFR28_00723 at 762.006 kb on + strand, within PFR28_00723 at 762.006 kb on + strand, within PFR28_00723 at 762.006 kb on + strand, within PFR28_00723 at 762.006 kb on + strand, within PFR28_00723 at 762.006 kb on + strand, within PFR28_00723 at 762.006 kb on + strand, within PFR28_00723 at 762.006 kb on + strand, within PFR28_00723 at 762.006 kb on + strand, within PFR28_00723 at 762.007 kb on - strand, within PFR28_00723 at 762.007 kb on - strand, within PFR28_00723 at 762.007 kb on - strand, within PFR28_00723
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannitol (C) 10 mM remove 759,725 + PFR28_00720 0.25 +0.2 759,725 + PFR28_00720 0.25 -0.7 759,725 + PFR28_00720 0.25 -1.2 759,726 - PFR28_00720 0.25 -1.4 759,767 + PFR28_00720 0.36 +0.0 759,767 + PFR28_00720 0.36 -0.5 759,767 + PFR28_00720 0.36 -2.6 759,768 - PFR28_00720 0.37 -1.2 759,768 - PFR28_00720 0.37 -0.6 759,768 - PFR28_00720 0.37 -0.6 759,768 - PFR28_00720 0.37 +0.8 759,768 - PFR28_00720 0.37 +0.3 759,768 - PFR28_00720 0.37 -0.2 759,899 + PFR28_00720 0.71 -0.7 759,899 + PFR28_00720 0.71 +0.8 759,899 + PFR28_00720 0.71 +1.1 759,899 + PFR28_00720 0.71 -0.6 759,900 - PFR28_00720 0.72 +0.9 760,049 + -1.0 760,049 + -0.6 760,050 - -0.8 760,117 + +0.3 760,118 - -0.3 760,118 - -1.6 760,118 - -0.9 760,123 + -2.2 760,123 + -0.0 760,123 + +1.2 760,123 + -0.0 760,123 + -0.9 760,123 + +0.6 760,123 + -1.1 760,123 + +0.1 760,123 + -0.4 760,123 + -0.2 760,123 + +0.5 760,123 + -0.3 760,123 + -0.5 760,123 + -0.4 760,123 + +0.9 760,124 - +1.0 760,124 - -0.2 760,124 - -1.4 760,124 - -0.6 760,124 - +0.8 760,124 - +0.7 760,124 - +0.2 760,124 - +1.6 760,124 - -0.9 760,124 - -0.8 760,124 - -2.0 760,124 - -0.5 760,124 - +0.8 760,124 - +0.3 760,124 - -0.5 760,124 - +0.0 760,124 - +1.8 760,124 - +0.0 760,124 - +0.2 760,124 - +0.6 760,124 - +0.2 760,124 - +0.9 760,124 - +1.2 760,134 + +1.5 760,134 + +0.2 760,188 + PFR28_00721 0.13 +0.2 760,270 + PFR28_00721 0.41 +0.9 760,271 - PFR28_00721 0.42 +1.4 760,271 - PFR28_00721 0.42 +0.6 760,420 + -0.2 760,421 - -0.2 760,421 - +1.8 760,469 + -1.4 760,470 - -0.7 760,507 + +0.4 760,550 + -1.5 760,550 + -0.2 760,550 + -0.7 760,551 - -0.6 760,551 - -1.1 760,551 - +0.5 760,551 - +1.1 760,551 - -0.9 760,920 - PFR28_00722 0.78 +0.1 760,920 - PFR28_00722 0.78 -1.0 761,005 + +0.3 761,005 + -0.8 761,005 + -0.2 761,006 - +2.8 761,158 + -0.1 761,158 + -0.2 761,158 + +0.5 761,158 + -1.0 761,158 + -0.7 761,158 + -0.1 761,158 + +0.6 761,158 + -0.1 761,159 - +0.8 761,159 - +1.0 761,159 - -1.5 761,159 - +1.6 761,159 - +0.5 761,159 - -0.3 761,159 - +0.3 761,159 - -1.7 761,159 - -0.6 761,160 + -0.9 761,180 + -0.3 761,180 + +0.4 761,180 + -0.2 761,181 - -0.8 761,214 + +0.3 761,214 + +0.2 761,214 + +0.7 761,214 + +0.3 761,214 + -0.6 761,215 - +2.0 761,215 - -0.4 761,215 - -0.2 761,236 + -0.9 761,236 + -0.2 761,236 + +1.8 761,236 + +0.7 761,236 + +0.6 761,283 - -0.5 761,283 - -1.5 761,283 - +1.0 761,343 + -0.0 761,344 - +0.8 761,354 + -0.5 761,355 - +0.3 761,485 - +0.4 761,485 - +0.4 761,485 - -0.8 761,565 + PFR28_00723 0.12 +1.1 761,583 + PFR28_00723 0.13 -0.7 761,583 + PFR28_00723 0.13 -0.2 761,584 - PFR28_00723 0.13 +0.0 761,584 - PFR28_00723 0.13 +1.0 761,903 + PFR28_00723 0.29 -0.5 761,903 + PFR28_00723 0.29 +0.5 761,903 + PFR28_00723 0.29 -0.8 761,903 + PFR28_00723 0.29 -0.0 761,903 + PFR28_00723 0.29 +1.0 761,904 - PFR28_00723 0.29 +0.2 761,904 - PFR28_00723 0.29 +0.3 762,000 + PFR28_00723 0.34 -0.2 762,000 + PFR28_00723 0.34 +0.5 762,000 + PFR28_00723 0.34 +0.3 762,000 + PFR28_00723 0.34 -0.0 762,000 + PFR28_00723 0.34 -1.2 762,000 + PFR28_00723 0.34 +0.1 762,001 - PFR28_00723 0.34 -0.5 762,001 - PFR28_00723 0.34 +0.2 762,006 + PFR28_00723 0.34 +0.8 762,006 + PFR28_00723 0.34 +0.8 762,006 + PFR28_00723 0.34 -1.8 762,006 + PFR28_00723 0.34 +0.1 762,006 + PFR28_00723 0.34 +0.7 762,006 + PFR28_00723 0.34 +0.9 762,006 + PFR28_00723 0.34 +0.3 762,006 + PFR28_00723 0.34 -1.4 762,007 - PFR28_00723 0.34 +0.0 762,007 - PFR28_00723 0.34 -0.1 762,007 - PFR28_00723 0.34 +0.4
Or see this region's nucleotide sequence