Strain Fitness in Pseudomonas sp. RS175 around PFR28_00239

Experiment: D-Mannitol (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00238 and PFR28_00239 are separated by 237 nucleotidesPFR28_00239 and PFR28_00240 are separated by 151 nucleotides PFR28_00238: PFR28_00238 - Chemotaxis protein CheV, at 263,989 to 264,891 _00238 PFR28_00239: PFR28_00239 - Nitric oxide reductase transcription regulator NorR2, at 265,129 to 266,685 _00239 PFR28_00240: PFR28_00240 - Flavohemoprotein, at 266,837 to 268,018 _00240 Position (kb) 265 266 267Strain fitness (log2 ratio) -2 -1 0 1 2at 264.140 kb on + strand, within PFR28_00238at 264.140 kb on + strand, within PFR28_00238at 264.140 kb on + strand, within PFR28_00238at 264.140 kb on + strand, within PFR28_00238at 264.140 kb on + strand, within PFR28_00238at 264.141 kb on - strand, within PFR28_00238at 264.141 kb on - strand, within PFR28_00238at 264.141 kb on - strand, within PFR28_00238at 264.141 kb on - strand, within PFR28_00238at 264.141 kb on - strand, within PFR28_00238at 264.141 kb on - strand, within PFR28_00238at 264.188 kb on + strand, within PFR28_00238at 264.391 kb on + strand, within PFR28_00238at 264.478 kb on + strand, within PFR28_00238at 264.478 kb on + strand, within PFR28_00238at 264.479 kb on - strand, within PFR28_00238at 264.479 kb on - strand, within PFR28_00238at 264.742 kb on + strand, within PFR28_00238at 264.742 kb on + strand, within PFR28_00238at 264.742 kb on + strand, within PFR28_00238at 264.742 kb on + strand, within PFR28_00238at 264.743 kb on - strand, within PFR28_00238at 264.843 kb on + strandat 264.843 kb on + strandat 264.843 kb on + strandat 264.844 kb on - strandat 264.844 kb on - strandat 264.891 kb on + strandat 264.891 kb on + strandat 264.891 kb on + strandat 264.891 kb on + strandat 264.892 kb on - strandat 264.892 kb on - strandat 264.892 kb on - strandat 264.906 kb on + strandat 264.906 kb on + strandat 264.951 kb on - strandat 264.982 kb on + strandat 264.982 kb on + strandat 265.034 kb on - strandat 265.069 kb on + strandat 265.070 kb on - strandat 265.130 kb on + strandat 265.130 kb on + strandat 265.130 kb on + strandat 265.130 kb on + strandat 265.131 kb on - strandat 265.131 kb on - strandat 265.131 kb on - strandat 265.275 kb on + strandat 265.275 kb on + strandat 265.275 kb on + strandat 265.276 kb on - strandat 265.458 kb on + strand, within PFR28_00239at 265.458 kb on + strand, within PFR28_00239at 265.458 kb on + strand, within PFR28_00239at 265.472 kb on + strand, within PFR28_00239at 265.472 kb on + strand, within PFR28_00239at 265.473 kb on - strand, within PFR28_00239at 265.473 kb on - strand, within PFR28_00239at 265.600 kb on + strand, within PFR28_00239at 265.614 kb on - strand, within PFR28_00239at 265.631 kb on + strand, within PFR28_00239at 265.631 kb on + strand, within PFR28_00239at 265.631 kb on + strand, within PFR28_00239at 265.631 kb on + strand, within PFR28_00239at 265.631 kb on + strand, within PFR28_00239at 265.632 kb on - strand, within PFR28_00239at 265.632 kb on - strand, within PFR28_00239at 265.632 kb on - strand, within PFR28_00239at 265.632 kb on - strand, within PFR28_00239at 265.632 kb on - strand, within PFR28_00239at 266.032 kb on + strand, within PFR28_00239at 266.082 kb on + strand, within PFR28_00239at 266.139 kb on - strand, within PFR28_00239at 266.335 kb on + strand, within PFR28_00239at 266.810 kb on + strandat 266.921 kb on + strandat 267.018 kb on + strand, within PFR28_00240at 267.018 kb on + strand, within PFR28_00240at 267.019 kb on - strand, within PFR28_00240at 267.019 kb on - strand, within PFR28_00240at 267.026 kb on + strand, within PFR28_00240at 267.026 kb on + strand, within PFR28_00240at 267.026 kb on + strand, within PFR28_00240at 267.026 kb on + strand, within PFR28_00240at 267.027 kb on - strand, within PFR28_00240at 267.027 kb on - strand, within PFR28_00240at 267.215 kb on + strand, within PFR28_00240at 267.215 kb on + strand, within PFR28_00240at 267.216 kb on - strand, within PFR28_00240at 267.260 kb on + strand, within PFR28_00240at 267.260 kb on + strand, within PFR28_00240at 267.260 kb on + strand, within PFR28_00240at 267.260 kb on + strand, within PFR28_00240at 267.260 kb on + strand, within PFR28_00240at 267.260 kb on + strand, within PFR28_00240at 267.260 kb on + strand, within PFR28_00240at 267.260 kb on + strand, within PFR28_00240at 267.260 kb on + strand, within PFR28_00240at 267.261 kb on - strand, within PFR28_00240at 267.261 kb on - strand, within PFR28_00240at 267.312 kb on + strand, within PFR28_00240at 267.356 kb on + strand, within PFR28_00240at 267.407 kb on + strand, within PFR28_00240at 267.407 kb on + strand, within PFR28_00240at 267.407 kb on + strand, within PFR28_00240at 267.408 kb on - strand, within PFR28_00240at 267.408 kb on - strand, within PFR28_00240at 267.408 kb on - strand, within PFR28_00240at 267.445 kb on - strand, within PFR28_00240at 267.445 kb on - strand, within PFR28_00240at 267.455 kb on + strand, within PFR28_00240at 267.455 kb on + strand, within PFR28_00240at 267.455 kb on + strand, within PFR28_00240at 267.456 kb on - strand, within PFR28_00240at 267.456 kb on - strand, within PFR28_00240at 267.533 kb on + strand, within PFR28_00240at 267.534 kb on - strand, within PFR28_00240at 267.534 kb on - strand, within PFR28_00240at 267.596 kb on + strand, within PFR28_00240

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannitol (C) 10 mM
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264,140 + PFR28_00238 0.17 -0.3
264,140 + PFR28_00238 0.17 -0.1
264,140 + PFR28_00238 0.17 -0.7
264,140 + PFR28_00238 0.17 -0.9
264,140 + PFR28_00238 0.17 -0.7
264,141 - PFR28_00238 0.17 -0.3
264,141 - PFR28_00238 0.17 +0.2
264,141 - PFR28_00238 0.17 +0.2
264,141 - PFR28_00238 0.17 -0.9
264,141 - PFR28_00238 0.17 -1.8
264,141 - PFR28_00238 0.17 -1.0
264,188 + PFR28_00238 0.22 +0.2
264,391 + PFR28_00238 0.45 -1.0
264,478 + PFR28_00238 0.54 -0.4
264,478 + PFR28_00238 0.54 -0.2
264,479 - PFR28_00238 0.54 -0.1
264,479 - PFR28_00238 0.54 +0.4
264,742 + PFR28_00238 0.83 -0.9
264,742 + PFR28_00238 0.83 -1.2
264,742 + PFR28_00238 0.83 +0.2
264,742 + PFR28_00238 0.83 +1.3
264,743 - PFR28_00238 0.83 -0.4
264,843 + -0.6
264,843 + +1.1
264,843 + -0.3
264,844 - -0.6
264,844 - -0.9
264,891 + +0.3
264,891 + -1.9
264,891 + +0.0
264,891 + +0.1
264,892 - +0.3
264,892 - -1.1
264,892 - +0.1
264,906 + -1.0
264,906 + +0.6
264,951 - -1.6
264,982 + -0.3
264,982 + -0.3
265,034 - +0.4
265,069 + -0.1
265,070 - +0.6
265,130 + -1.2
265,130 + +2.1
265,130 + +0.0
265,130 + +0.6
265,131 - -0.2
265,131 - -0.3
265,131 - -1.4
265,275 + +0.1
265,275 + +0.3
265,275 + -0.0
265,276 - -0.0
265,458 + PFR28_00239 0.21 +0.5
265,458 + PFR28_00239 0.21 -0.1
265,458 + PFR28_00239 0.21 -0.6
265,472 + PFR28_00239 0.22 -0.5
265,472 + PFR28_00239 0.22 +1.3
265,473 - PFR28_00239 0.22 +0.3
265,473 - PFR28_00239 0.22 -0.2
265,600 + PFR28_00239 0.30 +0.7
265,614 - PFR28_00239 0.31 -1.3
265,631 + PFR28_00239 0.32 -0.9
265,631 + PFR28_00239 0.32 -0.4
265,631 + PFR28_00239 0.32 +0.5
265,631 + PFR28_00239 0.32 +1.7
265,631 + PFR28_00239 0.32 +0.4
265,632 - PFR28_00239 0.32 +0.8
265,632 - PFR28_00239 0.32 +0.5
265,632 - PFR28_00239 0.32 -0.3
265,632 - PFR28_00239 0.32 -0.4
265,632 - PFR28_00239 0.32 +0.6
266,032 + PFR28_00239 0.58 +0.1
266,082 + PFR28_00239 0.61 -1.3
266,139 - PFR28_00239 0.65 +0.7
266,335 + PFR28_00239 0.77 +0.6
266,810 + -0.3
266,921 + -0.0
267,018 + PFR28_00240 0.15 -0.2
267,018 + PFR28_00240 0.15 +0.3
267,019 - PFR28_00240 0.15 -0.2
267,019 - PFR28_00240 0.15 -0.2
267,026 + PFR28_00240 0.16 -0.0
267,026 + PFR28_00240 0.16 +1.0
267,026 + PFR28_00240 0.16 -0.8
267,026 + PFR28_00240 0.16 -0.4
267,027 - PFR28_00240 0.16 -0.4
267,027 - PFR28_00240 0.16 +0.3
267,215 + PFR28_00240 0.32 +0.1
267,215 + PFR28_00240 0.32 +0.2
267,216 - PFR28_00240 0.32 -1.6
267,260 + PFR28_00240 0.36 -0.7
267,260 + PFR28_00240 0.36 +0.1
267,260 + PFR28_00240 0.36 +1.4
267,260 + PFR28_00240 0.36 +0.0
267,260 + PFR28_00240 0.36 +0.2
267,260 + PFR28_00240 0.36 -0.4
267,260 + PFR28_00240 0.36 +1.1
267,260 + PFR28_00240 0.36 +0.3
267,260 + PFR28_00240 0.36 +0.7
267,261 - PFR28_00240 0.36 +0.2
267,261 - PFR28_00240 0.36 +0.1
267,312 + PFR28_00240 0.40 -0.7
267,356 + PFR28_00240 0.44 -0.3
267,407 + PFR28_00240 0.48 +0.4
267,407 + PFR28_00240 0.48 -0.6
267,407 + PFR28_00240 0.48 -0.2
267,408 - PFR28_00240 0.48 -1.7
267,408 - PFR28_00240 0.48 -0.2
267,408 - PFR28_00240 0.48 -0.0
267,445 - PFR28_00240 0.51 -0.9
267,445 - PFR28_00240 0.51 +0.6
267,455 + PFR28_00240 0.52 -1.2
267,455 + PFR28_00240 0.52 +0.9
267,455 + PFR28_00240 0.52 +0.1
267,456 - PFR28_00240 0.52 -0.2
267,456 - PFR28_00240 0.52 -0.0
267,533 + PFR28_00240 0.59 -0.1
267,534 - PFR28_00240 0.59 +0.1
267,534 - PFR28_00240 0.59 -1.2
267,596 + PFR28_00240 0.64 +0.6

Or see this region's nucleotide sequence