Experiment: Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydjX and ydjY are separated by 4 nucleotides ydjY and ydjZ are separated by 14 nucleotides ydjZ and ynjA overlap by 1 nucleotides ynjA and ynjB are separated by 9 nucleotides
MCAODC_18515: ydjX - TVP38/TMEM64 family membrane protein YdjX, at 562,181 to 562,891
ydjX
MCAODC_18520: ydjY - Uncharacterized protein YdjY, at 562,896 to 563,573
ydjY
MCAODC_18525: ydjZ - TVP38/TMEM64 family inner membrane protein YdjZ, at 563,588 to 564,295
ydjZ
MCAODC_18530: ynjA - Uncharacterized protein YnjA, at 564,295 to 564,843
ynjA
MCAODC_18535: ynjB - ABC transporter substrate-binding protein, at 564,853 to 566,019
ynjB
Position (kb) 563
564
565 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 562.662 kb on - strand, within ydjX at 562.664 kb on - strand, within ydjX at 562.667 kb on + strand, within ydjX at 562.670 kb on - strand, within ydjX at 562.670 kb on - strand, within ydjX at 562.703 kb on - strand, within ydjX at 562.908 kb on + strand at 563.085 kb on - strand, within ydjY at 563.085 kb on - strand, within ydjY at 563.085 kb on - strand, within ydjY at 563.120 kb on + strand, within ydjY at 563.163 kb on - strand, within ydjY at 563.246 kb on + strand, within ydjY at 563.246 kb on + strand, within ydjY at 563.463 kb on + strand, within ydjY at 563.463 kb on + strand, within ydjY at 563.463 kb on + strand, within ydjY at 563.463 kb on + strand, within ydjY at 563.464 kb on - strand, within ydjY at 563.469 kb on + strand, within ydjY at 563.469 kb on + strand, within ydjY at 563.469 kb on + strand, within ydjY at 563.469 kb on + strand, within ydjY at 563.469 kb on + strand, within ydjY at 563.626 kb on + strand at 563.626 kb on + strand at 563.627 kb on - strand at 563.742 kb on + strand, within ydjZ at 563.742 kb on + strand, within ydjZ at 563.742 kb on + strand, within ydjZ at 563.743 kb on - strand, within ydjZ at 563.743 kb on - strand, within ydjZ at 563.743 kb on - strand, within ydjZ at 563.995 kb on + strand, within ydjZ at 564.080 kb on + strand, within ydjZ at 564.081 kb on - strand, within ydjZ at 564.155 kb on - strand, within ydjZ at 564.161 kb on + strand, within ydjZ at 564.162 kb on - strand, within ydjZ at 564.364 kb on + strand, within ynjA at 564.377 kb on + strand, within ynjA at 564.377 kb on + strand, within ynjA at 564.479 kb on + strand, within ynjA at 564.822 kb on + strand at 564.841 kb on + strand at 564.997 kb on + strand, within ynjB at 565.039 kb on - strand, within ynjB at 565.040 kb on + strand, within ynjB at 565.041 kb on - strand, within ynjB at 565.172 kb on + strand, within ynjB at 565.228 kb on + strand, within ynjB
Per-strain Table
Position Strand Gene LocusTag Fraction Bas58 remove 562,662 - ydjX MCAODC_18515 0.68 +1.2 562,664 - ydjX MCAODC_18515 0.68 +0.1 562,667 + ydjX MCAODC_18515 0.68 -0.9 562,670 - ydjX MCAODC_18515 0.69 +0.8 562,670 - ydjX MCAODC_18515 0.69 +0.8 562,703 - ydjX MCAODC_18515 0.73 -1.1 562,908 + +0.1 563,085 - ydjY MCAODC_18520 0.28 +2.2 563,085 - ydjY MCAODC_18520 0.28 -0.5 563,085 - ydjY MCAODC_18520 0.28 -0.1 563,120 + ydjY MCAODC_18520 0.33 -0.0 563,163 - ydjY MCAODC_18520 0.39 +1.2 563,246 + ydjY MCAODC_18520 0.52 -1.9 563,246 + ydjY MCAODC_18520 0.52 -1.7 563,463 + ydjY MCAODC_18520 0.84 -0.9 563,463 + ydjY MCAODC_18520 0.84 -1.4 563,463 + ydjY MCAODC_18520 0.84 -0.6 563,463 + ydjY MCAODC_18520 0.84 +0.8 563,464 - ydjY MCAODC_18520 0.84 +1.2 563,469 + ydjY MCAODC_18520 0.85 -0.7 563,469 + ydjY MCAODC_18520 0.85 -2.4 563,469 + ydjY MCAODC_18520 0.85 +3.1 563,469 + ydjY MCAODC_18520 0.85 +1.3 563,469 + ydjY MCAODC_18520 0.85 +0.2 563,626 + +0.7 563,626 + +0.4 563,627 - -2.7 563,742 + ydjZ MCAODC_18525 0.22 +0.3 563,742 + ydjZ MCAODC_18525 0.22 -1.7 563,742 + ydjZ MCAODC_18525 0.22 +0.4 563,743 - ydjZ MCAODC_18525 0.22 +0.8 563,743 - ydjZ MCAODC_18525 0.22 +0.1 563,743 - ydjZ MCAODC_18525 0.22 +0.4 563,995 + ydjZ MCAODC_18525 0.57 -1.7 564,080 + ydjZ MCAODC_18525 0.69 -0.8 564,081 - ydjZ MCAODC_18525 0.70 -0.3 564,155 - ydjZ MCAODC_18525 0.80 -1.9 564,161 + ydjZ MCAODC_18525 0.81 -1.4 564,162 - ydjZ MCAODC_18525 0.81 -2.0 564,364 + ynjA MCAODC_18530 0.13 +1.4 564,377 + ynjA MCAODC_18530 0.15 +0.4 564,377 + ynjA MCAODC_18530 0.15 -2.3 564,479 + ynjA MCAODC_18530 0.34 +0.4 564,822 + -1.6 564,841 + -0.8 564,997 + ynjB MCAODC_18535 0.12 -0.7 565,039 - ynjB MCAODC_18535 0.16 -0.4 565,040 + ynjB MCAODC_18535 0.16 +0.7 565,041 - ynjB MCAODC_18535 0.16 -0.1 565,172 + ynjB MCAODC_18535 0.27 -0.6 565,228 + ynjB MCAODC_18535 0.32 -0.9
Or see this region's nucleotide sequence