Strain Fitness in Escherichia coli ECRC101 around MCAODC_18235

Experiment: Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydiP and MCAODC_18235 are separated by 102 nucleotidesMCAODC_18235 and ydiQ are separated by 36 nucleotidesydiQ and ydiR are separated by 19 nucleotides MCAODC_18230: ydiP - Uncharacterized HTH-type transcriptional regulator YdiP, at 507,373 to 508,284 ydiP MCAODC_18235: MCAODC_18235 - hypothetical protein, at 508,387 to 508,563 _18235 MCAODC_18240: ydiQ - electron transfer flavoprotein, at 508,600 to 509,364 ydiQ MCAODC_18245: ydiR - electron transfer flavoprotein subunit alpha, at 509,384 to 510,322 ydiR Position (kb) 508 509Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 507.389 kb on - strandat 507.585 kb on + strand, within ydiPat 507.895 kb on + strand, within ydiPat 507.903 kb on + strand, within ydiPat 508.075 kb on + strand, within ydiPat 508.099 kb on + strand, within ydiPat 508.280 kb on + strandat 508.412 kb on - strand, within MCAODC_18235at 508.428 kb on + strand, within MCAODC_18235at 508.428 kb on + strand, within MCAODC_18235at 508.663 kb on + strandat 508.664 kb on - strandat 508.843 kb on + strand, within ydiQat 508.843 kb on + strand, within ydiQat 508.843 kb on + strand, within ydiQat 508.843 kb on + strand, within ydiQat 508.844 kb on - strand, within ydiQat 508.844 kb on - strand, within ydiQat 508.844 kb on - strand, within ydiQat 508.846 kb on - strand, within ydiQat 508.967 kb on - strand, within ydiQat 509.140 kb on - strand, within ydiQat 509.286 kb on + strand, within ydiQat 509.287 kb on - strand, within ydiQat 509.414 kb on - strandat 509.522 kb on + strand, within ydiR

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas58
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507,389 - +0.2
507,585 + ydiP MCAODC_18230 0.23 -0.5
507,895 + ydiP MCAODC_18230 0.57 -0.3
507,903 + ydiP MCAODC_18230 0.58 +0.5
508,075 + ydiP MCAODC_18230 0.77 +1.1
508,099 + ydiP MCAODC_18230 0.80 -0.9
508,280 + -1.3
508,412 - MCAODC_18235 0.14 -1.2
508,428 + MCAODC_18235 0.23 -0.3
508,428 + MCAODC_18235 0.23 -0.8
508,663 + -2.2
508,664 - -0.2
508,843 + ydiQ MCAODC_18240 0.32 +2.1
508,843 + ydiQ MCAODC_18240 0.32 +0.9
508,843 + ydiQ MCAODC_18240 0.32 -3.5
508,843 + ydiQ MCAODC_18240 0.32 +1.9
508,844 - ydiQ MCAODC_18240 0.32 +0.1
508,844 - ydiQ MCAODC_18240 0.32 +1.2
508,844 - ydiQ MCAODC_18240 0.32 +0.5
508,846 - ydiQ MCAODC_18240 0.32 +0.1
508,967 - ydiQ MCAODC_18240 0.48 +1.4
509,140 - ydiQ MCAODC_18240 0.71 +0.2
509,286 + ydiQ MCAODC_18240 0.90 +0.3
509,287 - ydiQ MCAODC_18240 0.90 -1.4
509,414 - +1.3
509,522 + ydiR MCAODC_18245 0.15 -1.7

Or see this region's nucleotide sequence