Strain Fitness in Escherichia coli ECRC101 around MCAODC_27835

Experiment: Control_ECRC101_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntaroL and yaiI are separated by 182 nucleotidesyaiI and proC are separated by 119 nucleotidesproC and adrA are separated by 16 nucleotides MCAODC_27825: aroL - shikimate kinase AroL, at 2,313,775 to 2,314,299 aroL MCAODC_27830: yaiI - YaiI/YqxD family protein, at 2,314,482 to 2,314,940 yaiI MCAODC_27835: proC - pyrroline-5-carboxylate reductase, at 2,315,060 to 2,315,869 proC MCAODC_27840: adrA - diguanylate cyclase AdrA, at 2,315,886 to 2,317,001 adrA Position (kb) 2315 2316Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2314.071 kb on + strand, within aroLat 2314.258 kb on - strandat 2314.316 kb on + strandat 2314.317 kb on - strandat 2314.317 kb on - strandat 2314.317 kb on - strandat 2314.436 kb on + strandat 2314.436 kb on + strandat 2314.437 kb on - strandat 2314.437 kb on - strandat 2314.437 kb on - strandat 2314.439 kb on - strandat 2314.439 kb on - strandat 2314.448 kb on + strandat 2314.596 kb on + strand, within yaiIat 2314.596 kb on + strand, within yaiIat 2314.596 kb on + strand, within yaiIat 2314.597 kb on - strand, within yaiIat 2314.597 kb on - strand, within yaiIat 2314.602 kb on - strand, within yaiIat 2314.602 kb on - strand, within yaiIat 2314.602 kb on - strand, within yaiIat 2314.607 kb on + strand, within yaiIat 2314.670 kb on + strand, within yaiIat 2314.671 kb on - strand, within yaiIat 2314.713 kb on + strand, within yaiIat 2314.713 kb on + strand, within yaiIat 2314.713 kb on + strand, within yaiIat 2314.713 kb on + strand, within yaiIat 2314.713 kb on + strand, within yaiIat 2314.714 kb on - strand, within yaiIat 2314.714 kb on - strand, within yaiIat 2314.714 kb on - strand, within yaiIat 2314.714 kb on - strand, within yaiIat 2314.714 kb on - strand, within yaiIat 2314.715 kb on + strand, within yaiIat 2314.716 kb on - strand, within yaiIat 2314.802 kb on + strand, within yaiIat 2314.803 kb on - strand, within yaiIat 2314.869 kb on - strand, within yaiIat 2314.869 kb on - strand, within yaiIat 2314.898 kb on + strandat 2314.899 kb on - strandat 2314.903 kb on - strandat 2314.940 kb on + strandat 2314.940 kb on + strandat 2314.961 kb on - strandat 2314.969 kb on - strandat 2314.996 kb on + strandat 2314.996 kb on + strandat 2315.081 kb on - strandat 2315.160 kb on + strand, within proCat 2315.161 kb on - strand, within proCat 2315.162 kb on + strand, within proCat 2315.162 kb on + strand, within proCat 2315.162 kb on + strand, within proCat 2315.162 kb on + strand, within proCat 2315.163 kb on - strand, within proCat 2315.163 kb on - strand, within proCat 2315.164 kb on + strand, within proCat 2315.164 kb on + strand, within proCat 2315.165 kb on - strand, within proCat 2315.165 kb on - strand, within proCat 2315.344 kb on + strand, within proCat 2315.488 kb on + strand, within proCat 2315.535 kb on + strand, within proCat 2315.599 kb on + strand, within proCat 2315.599 kb on + strand, within proCat 2315.740 kb on + strand, within proCat 2315.741 kb on - strand, within proCat 2315.741 kb on - strand, within proCat 2315.741 kb on - strand, within proCat 2315.836 kb on + strandat 2315.910 kb on - strandat 2315.910 kb on - strandat 2315.932 kb on + strandat 2316.008 kb on + strand, within adrAat 2316.008 kb on + strand, within adrAat 2316.009 kb on - strand, within adrAat 2316.009 kb on - strand, within adrAat 2316.009 kb on - strand, within adrAat 2316.009 kb on - strand, within adrAat 2316.009 kb on - strand, within adrAat 2316.009 kb on - strand, within adrAat 2316.021 kb on + strand, within adrAat 2316.021 kb on + strand, within adrAat 2316.045 kb on + strand, within adrAat 2316.045 kb on + strand, within adrAat 2316.046 kb on - strand, within adrAat 2316.046 kb on - strand, within adrAat 2316.051 kb on - strand, within adrAat 2316.054 kb on + strand, within adrAat 2316.072 kb on + strand, within adrAat 2316.083 kb on + strand, within adrAat 2316.118 kb on - strand, within adrAat 2316.178 kb on - strand, within adrAat 2316.231 kb on - strand, within adrAat 2316.270 kb on + strand, within adrAat 2316.271 kb on - strand, within adrAat 2316.302 kb on + strand, within adrAat 2316.323 kb on + strand, within adrAat 2316.323 kb on + strand, within adrAat 2316.323 kb on + strand, within adrAat 2316.323 kb on + strand, within adrAat 2316.323 kb on + strand, within adrAat 2316.324 kb on - strand, within adrAat 2316.324 kb on - strand, within adrAat 2316.324 kb on - strand, within adrAat 2316.345 kb on - strand, within adrAat 2316.346 kb on + strand, within adrAat 2316.346 kb on + strand, within adrAat 2316.347 kb on - strand, within adrAat 2316.395 kb on + strand, within adrAat 2316.395 kb on + strand, within adrAat 2316.396 kb on - strand, within adrAat 2316.451 kb on + strand, within adrAat 2316.451 kb on + strand, within adrAat 2316.452 kb on - strand, within adrAat 2316.452 kb on - strand, within adrAat 2316.461 kb on + strand, within adrAat 2316.462 kb on - strand, within adrAat 2316.614 kb on + strand, within adrAat 2316.614 kb on + strand, within adrAat 2316.615 kb on - strand, within adrAat 2316.615 kb on - strand, within adrAat 2316.615 kb on - strand, within adrAat 2316.658 kb on - strand, within adrAat 2316.681 kb on + strand, within adrAat 2316.682 kb on - strand, within adrAat 2316.703 kb on + strand, within adrAat 2316.704 kb on - strand, within adrAat 2316.704 kb on - strand, within adrAat 2316.742 kb on - strand, within adrAat 2316.753 kb on + strand, within adrA

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101_WM
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2,314,071 + aroL MCAODC_27825 0.56 -0.5
2,314,258 - +1.0
2,314,316 + -2.4
2,314,317 - -2.6
2,314,317 - -0.1
2,314,317 - +0.7
2,314,436 + +1.1
2,314,436 + -0.1
2,314,437 - -0.8
2,314,437 - +0.8
2,314,437 - -0.0
2,314,439 - +0.9
2,314,439 - +0.4
2,314,448 + -0.6
2,314,596 + yaiI MCAODC_27830 0.25 -1.0
2,314,596 + yaiI MCAODC_27830 0.25 -1.7
2,314,596 + yaiI MCAODC_27830 0.25 +0.1
2,314,597 - yaiI MCAODC_27830 0.25 +0.8
2,314,597 - yaiI MCAODC_27830 0.25 +1.1
2,314,602 - yaiI MCAODC_27830 0.26 -0.8
2,314,602 - yaiI MCAODC_27830 0.26 +0.2
2,314,602 - yaiI MCAODC_27830 0.26 -0.5
2,314,607 + yaiI MCAODC_27830 0.27 -0.2
2,314,670 + yaiI MCAODC_27830 0.41 -0.1
2,314,671 - yaiI MCAODC_27830 0.41 -0.6
2,314,713 + yaiI MCAODC_27830 0.50 +1.4
2,314,713 + yaiI MCAODC_27830 0.50 +0.2
2,314,713 + yaiI MCAODC_27830 0.50 -0.5
2,314,713 + yaiI MCAODC_27830 0.50 +0.4
2,314,713 + yaiI MCAODC_27830 0.50 -0.3
2,314,714 - yaiI MCAODC_27830 0.51 +0.3
2,314,714 - yaiI MCAODC_27830 0.51 -0.1
2,314,714 - yaiI MCAODC_27830 0.51 -0.6
2,314,714 - yaiI MCAODC_27830 0.51 +1.6
2,314,714 - yaiI MCAODC_27830 0.51 +0.1
2,314,715 + yaiI MCAODC_27830 0.51 -0.2
2,314,716 - yaiI MCAODC_27830 0.51 -0.0
2,314,802 + yaiI MCAODC_27830 0.70 -0.6
2,314,803 - yaiI MCAODC_27830 0.70 -0.2
2,314,869 - yaiI MCAODC_27830 0.84 -0.1
2,314,869 - yaiI MCAODC_27830 0.84 +0.4
2,314,898 + +1.0
2,314,899 - +0.3
2,314,903 - -1.0
2,314,940 + -0.2
2,314,940 + +0.2
2,314,961 - +0.4
2,314,969 - -0.2
2,314,996 + +2.0
2,314,996 + +0.4
2,315,081 - +3.0
2,315,160 + proC MCAODC_27835 0.12 -0.6
2,315,161 - proC MCAODC_27835 0.12 -2.2
2,315,162 + proC MCAODC_27835 0.13 -0.1
2,315,162 + proC MCAODC_27835 0.13 -2.0
2,315,162 + proC MCAODC_27835 0.13 +0.0
2,315,162 + proC MCAODC_27835 0.13 +0.6
2,315,163 - proC MCAODC_27835 0.13 -1.6
2,315,163 - proC MCAODC_27835 0.13 +1.7
2,315,164 + proC MCAODC_27835 0.13 -1.6
2,315,164 + proC MCAODC_27835 0.13 -1.1
2,315,165 - proC MCAODC_27835 0.13 -0.1
2,315,165 - proC MCAODC_27835 0.13 -1.1
2,315,344 + proC MCAODC_27835 0.35 -0.9
2,315,488 + proC MCAODC_27835 0.53 -0.3
2,315,535 + proC MCAODC_27835 0.59 -1.2
2,315,599 + proC MCAODC_27835 0.67 -1.2
2,315,599 + proC MCAODC_27835 0.67 -1.8
2,315,740 + proC MCAODC_27835 0.84 +2.7
2,315,741 - proC MCAODC_27835 0.84 +0.4
2,315,741 - proC MCAODC_27835 0.84 -0.4
2,315,741 - proC MCAODC_27835 0.84 +0.7
2,315,836 + -0.5
2,315,910 - +0.2
2,315,910 - +0.2
2,315,932 + -1.9
2,316,008 + adrA MCAODC_27840 0.11 -0.9
2,316,008 + adrA MCAODC_27840 0.11 -0.5
2,316,009 - adrA MCAODC_27840 0.11 +1.1
2,316,009 - adrA MCAODC_27840 0.11 -0.7
2,316,009 - adrA MCAODC_27840 0.11 -0.3
2,316,009 - adrA MCAODC_27840 0.11 -1.3
2,316,009 - adrA MCAODC_27840 0.11 -0.4
2,316,009 - adrA MCAODC_27840 0.11 +0.1
2,316,021 + adrA MCAODC_27840 0.12 -0.5
2,316,021 + adrA MCAODC_27840 0.12 +0.8
2,316,045 + adrA MCAODC_27840 0.14 +0.3
2,316,045 + adrA MCAODC_27840 0.14 +1.1
2,316,046 - adrA MCAODC_27840 0.14 +0.1
2,316,046 - adrA MCAODC_27840 0.14 +0.5
2,316,051 - adrA MCAODC_27840 0.15 -1.2
2,316,054 + adrA MCAODC_27840 0.15 +1.5
2,316,072 + adrA MCAODC_27840 0.17 -1.2
2,316,083 + adrA MCAODC_27840 0.18 -2.6
2,316,118 - adrA MCAODC_27840 0.21 -0.7
2,316,178 - adrA MCAODC_27840 0.26 -1.3
2,316,231 - adrA MCAODC_27840 0.31 +0.9
2,316,270 + adrA MCAODC_27840 0.34 -2.0
2,316,271 - adrA MCAODC_27840 0.34 -0.9
2,316,302 + adrA MCAODC_27840 0.37 +0.4
2,316,323 + adrA MCAODC_27840 0.39 -0.5
2,316,323 + adrA MCAODC_27840 0.39 -0.4
2,316,323 + adrA MCAODC_27840 0.39 -0.7
2,316,323 + adrA MCAODC_27840 0.39 +0.0
2,316,323 + adrA MCAODC_27840 0.39 -1.2
2,316,324 - adrA MCAODC_27840 0.39 +3.3
2,316,324 - adrA MCAODC_27840 0.39 -0.7
2,316,324 - adrA MCAODC_27840 0.39 -0.8
2,316,345 - adrA MCAODC_27840 0.41 -3.5
2,316,346 + adrA MCAODC_27840 0.41 -0.2
2,316,346 + adrA MCAODC_27840 0.41 +0.5
2,316,347 - adrA MCAODC_27840 0.41 +0.8
2,316,395 + adrA MCAODC_27840 0.46 +0.2
2,316,395 + adrA MCAODC_27840 0.46 -1.8
2,316,396 - adrA MCAODC_27840 0.46 -0.9
2,316,451 + adrA MCAODC_27840 0.51 -0.4
2,316,451 + adrA MCAODC_27840 0.51 -0.2
2,316,452 - adrA MCAODC_27840 0.51 +0.4
2,316,452 - adrA MCAODC_27840 0.51 -0.7
2,316,461 + adrA MCAODC_27840 0.52 +0.1
2,316,462 - adrA MCAODC_27840 0.52 -0.1
2,316,614 + adrA MCAODC_27840 0.65 +1.0
2,316,614 + adrA MCAODC_27840 0.65 +0.1
2,316,615 - adrA MCAODC_27840 0.65 -0.0
2,316,615 - adrA MCAODC_27840 0.65 -0.7
2,316,615 - adrA MCAODC_27840 0.65 +0.9
2,316,658 - adrA MCAODC_27840 0.69 -0.4
2,316,681 + adrA MCAODC_27840 0.71 -0.2
2,316,682 - adrA MCAODC_27840 0.71 -0.6
2,316,703 + adrA MCAODC_27840 0.73 -0.4
2,316,704 - adrA MCAODC_27840 0.73 -0.9
2,316,704 - adrA MCAODC_27840 0.73 -0.2
2,316,742 - adrA MCAODC_27840 0.77 -0.3
2,316,753 + adrA MCAODC_27840 0.78 -1.6

Or see this region's nucleotide sequence