Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aroL and yaiI are separated by 182 nucleotides yaiI and proC are separated by 119 nucleotides proC and adrA are separated by 16 nucleotides
MCAODC_27825: aroL - shikimate kinase AroL, at 2,313,775 to 2,314,299
aroL
MCAODC_27830: yaiI - YaiI/YqxD family protein, at 2,314,482 to 2,314,940
yaiI
MCAODC_27835: proC - pyrroline-5-carboxylate reductase, at 2,315,060 to 2,315,869
proC
MCAODC_27840: adrA - diguanylate cyclase AdrA, at 2,315,886 to 2,317,001
adrA
Position (kb)
2315
2316 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2314.071 kb on + strand, within aroL at 2314.258 kb on - strand at 2314.316 kb on + strand at 2314.317 kb on - strand at 2314.317 kb on - strand at 2314.317 kb on - strand at 2314.436 kb on + strand at 2314.436 kb on + strand at 2314.437 kb on - strand at 2314.437 kb on - strand at 2314.437 kb on - strand at 2314.439 kb on - strand at 2314.439 kb on - strand at 2314.448 kb on + strand at 2314.596 kb on + strand, within yaiI at 2314.596 kb on + strand, within yaiI at 2314.596 kb on + strand, within yaiI at 2314.597 kb on - strand, within yaiI at 2314.597 kb on - strand, within yaiI at 2314.602 kb on - strand, within yaiI at 2314.602 kb on - strand, within yaiI at 2314.602 kb on - strand, within yaiI at 2314.607 kb on + strand, within yaiI at 2314.670 kb on + strand, within yaiI at 2314.671 kb on - strand, within yaiI at 2314.713 kb on + strand, within yaiI at 2314.713 kb on + strand, within yaiI at 2314.713 kb on + strand, within yaiI at 2314.713 kb on + strand, within yaiI at 2314.713 kb on + strand, within yaiI at 2314.714 kb on - strand, within yaiI at 2314.714 kb on - strand, within yaiI at 2314.714 kb on - strand, within yaiI at 2314.714 kb on - strand, within yaiI at 2314.714 kb on - strand, within yaiI at 2314.715 kb on + strand, within yaiI at 2314.716 kb on - strand, within yaiI at 2314.802 kb on + strand, within yaiI at 2314.803 kb on - strand, within yaiI at 2314.869 kb on - strand, within yaiI at 2314.869 kb on - strand, within yaiI at 2314.898 kb on + strand at 2314.899 kb on - strand at 2314.903 kb on - strand at 2314.940 kb on + strand at 2314.940 kb on + strand at 2314.961 kb on - strand at 2314.969 kb on - strand at 2314.996 kb on + strand at 2314.996 kb on + strand at 2315.081 kb on - strand at 2315.160 kb on + strand, within proC at 2315.161 kb on - strand, within proC at 2315.162 kb on + strand, within proC at 2315.162 kb on + strand, within proC at 2315.162 kb on + strand, within proC at 2315.162 kb on + strand, within proC at 2315.163 kb on - strand, within proC at 2315.163 kb on - strand, within proC at 2315.164 kb on + strand, within proC at 2315.164 kb on + strand, within proC at 2315.165 kb on - strand, within proC at 2315.165 kb on - strand, within proC at 2315.344 kb on + strand, within proC at 2315.488 kb on + strand, within proC at 2315.535 kb on + strand, within proC at 2315.599 kb on + strand, within proC at 2315.599 kb on + strand, within proC at 2315.740 kb on + strand, within proC at 2315.741 kb on - strand, within proC at 2315.741 kb on - strand, within proC at 2315.741 kb on - strand, within proC at 2315.836 kb on + strand at 2315.910 kb on - strand at 2315.910 kb on - strand at 2315.932 kb on + strand at 2316.008 kb on + strand, within adrA at 2316.008 kb on + strand, within adrA at 2316.009 kb on - strand, within adrA at 2316.009 kb on - strand, within adrA at 2316.009 kb on - strand, within adrA at 2316.009 kb on - strand, within adrA at 2316.009 kb on - strand, within adrA at 2316.009 kb on - strand, within adrA at 2316.021 kb on + strand, within adrA at 2316.021 kb on + strand, within adrA at 2316.045 kb on + strand, within adrA at 2316.045 kb on + strand, within adrA at 2316.046 kb on - strand, within adrA at 2316.046 kb on - strand, within adrA at 2316.051 kb on - strand, within adrA at 2316.054 kb on + strand, within adrA at 2316.072 kb on + strand, within adrA at 2316.083 kb on + strand, within adrA at 2316.118 kb on - strand, within adrA at 2316.178 kb on - strand, within adrA at 2316.231 kb on - strand, within adrA at 2316.270 kb on + strand, within adrA at 2316.271 kb on - strand, within adrA at 2316.302 kb on + strand, within adrA at 2316.323 kb on + strand, within adrA at 2316.323 kb on + strand, within adrA at 2316.323 kb on + strand, within adrA at 2316.323 kb on + strand, within adrA at 2316.323 kb on + strand, within adrA at 2316.324 kb on - strand, within adrA at 2316.324 kb on - strand, within adrA at 2316.324 kb on - strand, within adrA at 2316.345 kb on - strand, within adrA at 2316.346 kb on + strand, within adrA at 2316.346 kb on + strand, within adrA at 2316.347 kb on - strand, within adrA at 2316.395 kb on + strand, within adrA at 2316.395 kb on + strand, within adrA at 2316.396 kb on - strand, within adrA at 2316.451 kb on + strand, within adrA at 2316.451 kb on + strand, within adrA at 2316.452 kb on - strand, within adrA at 2316.452 kb on - strand, within adrA at 2316.461 kb on + strand, within adrA at 2316.462 kb on - strand, within adrA at 2316.614 kb on + strand, within adrA at 2316.614 kb on + strand, within adrA at 2316.615 kb on - strand, within adrA at 2316.615 kb on - strand, within adrA at 2316.615 kb on - strand, within adrA at 2316.658 kb on - strand, within adrA at 2316.681 kb on + strand, within adrA at 2316.682 kb on - strand, within adrA at 2316.703 kb on + strand, within adrA at 2316.704 kb on - strand, within adrA at 2316.704 kb on - strand, within adrA at 2316.742 kb on - strand, within adrA at 2316.753 kb on + strand, within adrA
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101_WM remove 2,314,071 + aroL MCAODC_27825 0.56 -0.5 2,314,258 - +1.0 2,314,316 + -2.4 2,314,317 - -2.6 2,314,317 - -0.1 2,314,317 - +0.7 2,314,436 + +1.1 2,314,436 + -0.1 2,314,437 - -0.8 2,314,437 - +0.8 2,314,437 - -0.0 2,314,439 - +0.9 2,314,439 - +0.4 2,314,448 + -0.6 2,314,596 + yaiI MCAODC_27830 0.25 -1.0 2,314,596 + yaiI MCAODC_27830 0.25 -1.7 2,314,596 + yaiI MCAODC_27830 0.25 +0.1 2,314,597 - yaiI MCAODC_27830 0.25 +0.8 2,314,597 - yaiI MCAODC_27830 0.25 +1.1 2,314,602 - yaiI MCAODC_27830 0.26 -0.8 2,314,602 - yaiI MCAODC_27830 0.26 +0.2 2,314,602 - yaiI MCAODC_27830 0.26 -0.5 2,314,607 + yaiI MCAODC_27830 0.27 -0.2 2,314,670 + yaiI MCAODC_27830 0.41 -0.1 2,314,671 - yaiI MCAODC_27830 0.41 -0.6 2,314,713 + yaiI MCAODC_27830 0.50 +1.4 2,314,713 + yaiI MCAODC_27830 0.50 +0.2 2,314,713 + yaiI MCAODC_27830 0.50 -0.5 2,314,713 + yaiI MCAODC_27830 0.50 +0.4 2,314,713 + yaiI MCAODC_27830 0.50 -0.3 2,314,714 - yaiI MCAODC_27830 0.51 +0.3 2,314,714 - yaiI MCAODC_27830 0.51 -0.1 2,314,714 - yaiI MCAODC_27830 0.51 -0.6 2,314,714 - yaiI MCAODC_27830 0.51 +1.6 2,314,714 - yaiI MCAODC_27830 0.51 +0.1 2,314,715 + yaiI MCAODC_27830 0.51 -0.2 2,314,716 - yaiI MCAODC_27830 0.51 -0.0 2,314,802 + yaiI MCAODC_27830 0.70 -0.6 2,314,803 - yaiI MCAODC_27830 0.70 -0.2 2,314,869 - yaiI MCAODC_27830 0.84 -0.1 2,314,869 - yaiI MCAODC_27830 0.84 +0.4 2,314,898 + +1.0 2,314,899 - +0.3 2,314,903 - -1.0 2,314,940 + -0.2 2,314,940 + +0.2 2,314,961 - +0.4 2,314,969 - -0.2 2,314,996 + +2.0 2,314,996 + +0.4 2,315,081 - +3.0 2,315,160 + proC MCAODC_27835 0.12 -0.6 2,315,161 - proC MCAODC_27835 0.12 -2.2 2,315,162 + proC MCAODC_27835 0.13 -0.1 2,315,162 + proC MCAODC_27835 0.13 -2.0 2,315,162 + proC MCAODC_27835 0.13 +0.0 2,315,162 + proC MCAODC_27835 0.13 +0.6 2,315,163 - proC MCAODC_27835 0.13 -1.6 2,315,163 - proC MCAODC_27835 0.13 +1.7 2,315,164 + proC MCAODC_27835 0.13 -1.6 2,315,164 + proC MCAODC_27835 0.13 -1.1 2,315,165 - proC MCAODC_27835 0.13 -0.1 2,315,165 - proC MCAODC_27835 0.13 -1.1 2,315,344 + proC MCAODC_27835 0.35 -0.9 2,315,488 + proC MCAODC_27835 0.53 -0.3 2,315,535 + proC MCAODC_27835 0.59 -1.2 2,315,599 + proC MCAODC_27835 0.67 -1.2 2,315,599 + proC MCAODC_27835 0.67 -1.8 2,315,740 + proC MCAODC_27835 0.84 +2.7 2,315,741 - proC MCAODC_27835 0.84 +0.4 2,315,741 - proC MCAODC_27835 0.84 -0.4 2,315,741 - proC MCAODC_27835 0.84 +0.7 2,315,836 + -0.5 2,315,910 - +0.2 2,315,910 - +0.2 2,315,932 + -1.9 2,316,008 + adrA MCAODC_27840 0.11 -0.9 2,316,008 + adrA MCAODC_27840 0.11 -0.5 2,316,009 - adrA MCAODC_27840 0.11 +1.1 2,316,009 - adrA MCAODC_27840 0.11 -0.7 2,316,009 - adrA MCAODC_27840 0.11 -0.3 2,316,009 - adrA MCAODC_27840 0.11 -1.3 2,316,009 - adrA MCAODC_27840 0.11 -0.4 2,316,009 - adrA MCAODC_27840 0.11 +0.1 2,316,021 + adrA MCAODC_27840 0.12 -0.5 2,316,021 + adrA MCAODC_27840 0.12 +0.8 2,316,045 + adrA MCAODC_27840 0.14 +0.3 2,316,045 + adrA MCAODC_27840 0.14 +1.1 2,316,046 - adrA MCAODC_27840 0.14 +0.1 2,316,046 - adrA MCAODC_27840 0.14 +0.5 2,316,051 - adrA MCAODC_27840 0.15 -1.2 2,316,054 + adrA MCAODC_27840 0.15 +1.5 2,316,072 + adrA MCAODC_27840 0.17 -1.2 2,316,083 + adrA MCAODC_27840 0.18 -2.6 2,316,118 - adrA MCAODC_27840 0.21 -0.7 2,316,178 - adrA MCAODC_27840 0.26 -1.3 2,316,231 - adrA MCAODC_27840 0.31 +0.9 2,316,270 + adrA MCAODC_27840 0.34 -2.0 2,316,271 - adrA MCAODC_27840 0.34 -0.9 2,316,302 + adrA MCAODC_27840 0.37 +0.4 2,316,323 + adrA MCAODC_27840 0.39 -0.5 2,316,323 + adrA MCAODC_27840 0.39 -0.4 2,316,323 + adrA MCAODC_27840 0.39 -0.7 2,316,323 + adrA MCAODC_27840 0.39 +0.0 2,316,323 + adrA MCAODC_27840 0.39 -1.2 2,316,324 - adrA MCAODC_27840 0.39 +3.3 2,316,324 - adrA MCAODC_27840 0.39 -0.7 2,316,324 - adrA MCAODC_27840 0.39 -0.8 2,316,345 - adrA MCAODC_27840 0.41 -3.5 2,316,346 + adrA MCAODC_27840 0.41 -0.2 2,316,346 + adrA MCAODC_27840 0.41 +0.5 2,316,347 - adrA MCAODC_27840 0.41 +0.8 2,316,395 + adrA MCAODC_27840 0.46 +0.2 2,316,395 + adrA MCAODC_27840 0.46 -1.8 2,316,396 - adrA MCAODC_27840 0.46 -0.9 2,316,451 + adrA MCAODC_27840 0.51 -0.4 2,316,451 + adrA MCAODC_27840 0.51 -0.2 2,316,452 - adrA MCAODC_27840 0.51 +0.4 2,316,452 - adrA MCAODC_27840 0.51 -0.7 2,316,461 + adrA MCAODC_27840 0.52 +0.1 2,316,462 - adrA MCAODC_27840 0.52 -0.1 2,316,614 + adrA MCAODC_27840 0.65 +1.0 2,316,614 + adrA MCAODC_27840 0.65 +0.1 2,316,615 - adrA MCAODC_27840 0.65 -0.0 2,316,615 - adrA MCAODC_27840 0.65 -0.7 2,316,615 - adrA MCAODC_27840 0.65 +0.9 2,316,658 - adrA MCAODC_27840 0.69 -0.4 2,316,681 + adrA MCAODC_27840 0.71 -0.2 2,316,682 - adrA MCAODC_27840 0.71 -0.6 2,316,703 + adrA MCAODC_27840 0.73 -0.4 2,316,704 - adrA MCAODC_27840 0.73 -0.9 2,316,704 - adrA MCAODC_27840 0.73 -0.2 2,316,742 - adrA MCAODC_27840 0.77 -0.3 2,316,753 + adrA MCAODC_27840 0.78 -1.6
Or see this region's nucleotide sequence