Strain Fitness in Escherichia coli ECRC101 around MCAODC_24440

Experiment: Control_ECRC101_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_24435 and MCAODC_24440 are separated by 447 nucleotidesMCAODC_24440 and ybbA are separated by 547 nucleotides MCAODC_24435: MCAODC_24435 - DUF968 domain-containing protein, at 1,604,386 to 1,605,435 _24435 MCAODC_24440: MCAODC_24440 - Hok/gef family, at 1,605,883 to 1,606,095 _24440 MCAODC_24450: ybbA - iroE, at 1,606,643 to 1,607,416 ybbA Position (kb) 1605 1606 1607Strain fitness (log2 ratio) -2 -1 0 1at 1604.900 kb on - strand, within MCAODC_24435at 1604.938 kb on + strand, within MCAODC_24435at 1605.107 kb on + strand, within MCAODC_24435at 1605.115 kb on + strand, within MCAODC_24435at 1605.115 kb on + strand, within MCAODC_24435at 1605.115 kb on + strand, within MCAODC_24435at 1605.115 kb on + strand, within MCAODC_24435at 1605.115 kb on + strand, within MCAODC_24435at 1605.116 kb on - strand, within MCAODC_24435at 1605.116 kb on - strand, within MCAODC_24435at 1605.116 kb on - strand, within MCAODC_24435at 1605.176 kb on - strand, within MCAODC_24435at 1605.176 kb on - strand, within MCAODC_24435at 1605.176 kb on - strand, within MCAODC_24435at 1605.176 kb on - strand, within MCAODC_24435at 1605.885 kb on - strandat 1606.067 kb on + strand, within MCAODC_24440at 1606.067 kb on + strand, within MCAODC_24440at 1606.067 kb on + strand, within MCAODC_24440at 1606.096 kb on - strandat 1606.193 kb on + strandat 1606.193 kb on + strandat 1606.213 kb on + strandat 1606.218 kb on + strandat 1606.222 kb on + strandat 1606.222 kb on + strandat 1606.222 kb on + strandat 1606.312 kb on + strandat 1606.312 kb on + strandat 1606.313 kb on - strandat 1606.313 kb on - strandat 1606.313 kb on - strandat 1606.313 kb on - strandat 1606.395 kb on - strandat 1606.428 kb on - strandat 1606.503 kb on + strandat 1606.511 kb on + strandat 1606.528 kb on + strandat 1606.528 kb on + strandat 1606.528 kb on + strandat 1606.528 kb on + strandat 1606.611 kb on + strandat 1606.768 kb on - strand, within ybbA

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101_WM
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1,604,900 - MCAODC_24435 0.49 +0.4
1,604,938 + MCAODC_24435 0.53 -1.2
1,605,107 + MCAODC_24435 0.69 +0.6
1,605,115 + MCAODC_24435 0.69 -1.0
1,605,115 + MCAODC_24435 0.69 -0.8
1,605,115 + MCAODC_24435 0.69 -0.4
1,605,115 + MCAODC_24435 0.69 +1.1
1,605,115 + MCAODC_24435 0.69 +0.4
1,605,116 - MCAODC_24435 0.70 -0.7
1,605,116 - MCAODC_24435 0.70 +1.2
1,605,116 - MCAODC_24435 0.70 +0.5
1,605,176 - MCAODC_24435 0.75 -1.0
1,605,176 - MCAODC_24435 0.75 -0.2
1,605,176 - MCAODC_24435 0.75 +0.7
1,605,176 - MCAODC_24435 0.75 -0.5
1,605,885 - -2.2
1,606,067 + MCAODC_24440 0.86 -1.6
1,606,067 + MCAODC_24440 0.86 -1.3
1,606,067 + MCAODC_24440 0.86 +0.3
1,606,096 - -0.2
1,606,193 + +0.4
1,606,193 + +0.2
1,606,213 + +0.5
1,606,218 + -0.5
1,606,222 + +0.2
1,606,222 + +0.9
1,606,222 + -0.9
1,606,312 + +1.6
1,606,312 + -0.8
1,606,313 - +1.6
1,606,313 - +0.1
1,606,313 - +0.2
1,606,313 - +1.5
1,606,395 - -0.0
1,606,428 - +1.6
1,606,503 + -1.1
1,606,511 + +0.6
1,606,528 + -0.2
1,606,528 + -0.3
1,606,528 + +0.3
1,606,528 + +0.6
1,606,611 + +0.5
1,606,768 - ybbA MCAODC_24450 0.16 -0.7

Or see this region's nucleotide sequence