Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_24435 and MCAODC_24440 are separated by 447 nucleotides MCAODC_24440 and ybbA are separated by 547 nucleotides
MCAODC_24435: MCAODC_24435 - DUF968 domain-containing protein, at 1,604,386 to 1,605,435
_24435
MCAODC_24440: MCAODC_24440 - Hok/gef family, at 1,605,883 to 1,606,095
_24440
MCAODC_24450: ybbA - iroE, at 1,606,643 to 1,607,416
ybbA
Position (kb)
1605
1606
1607 Strain fitness (log2 ratio)
-2
-1
0
1 at 1604.900 kb on - strand, within MCAODC_24435 at 1604.938 kb on + strand, within MCAODC_24435 at 1605.107 kb on + strand, within MCAODC_24435 at 1605.115 kb on + strand, within MCAODC_24435 at 1605.115 kb on + strand, within MCAODC_24435 at 1605.115 kb on + strand, within MCAODC_24435 at 1605.115 kb on + strand, within MCAODC_24435 at 1605.115 kb on + strand, within MCAODC_24435 at 1605.116 kb on - strand, within MCAODC_24435 at 1605.116 kb on - strand, within MCAODC_24435 at 1605.116 kb on - strand, within MCAODC_24435 at 1605.176 kb on - strand, within MCAODC_24435 at 1605.176 kb on - strand, within MCAODC_24435 at 1605.176 kb on - strand, within MCAODC_24435 at 1605.176 kb on - strand, within MCAODC_24435 at 1605.885 kb on - strand at 1606.067 kb on + strand, within MCAODC_24440 at 1606.067 kb on + strand, within MCAODC_24440 at 1606.067 kb on + strand, within MCAODC_24440 at 1606.096 kb on - strand at 1606.193 kb on + strand at 1606.193 kb on + strand at 1606.213 kb on + strand at 1606.218 kb on + strand at 1606.222 kb on + strand at 1606.222 kb on + strand at 1606.222 kb on + strand at 1606.312 kb on + strand at 1606.312 kb on + strand at 1606.313 kb on - strand at 1606.313 kb on - strand at 1606.313 kb on - strand at 1606.313 kb on - strand at 1606.395 kb on - strand at 1606.428 kb on - strand at 1606.503 kb on + strand at 1606.511 kb on + strand at 1606.528 kb on + strand at 1606.528 kb on + strand at 1606.528 kb on + strand at 1606.528 kb on + strand at 1606.611 kb on + strand at 1606.768 kb on - strand, within ybbA
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101_WM remove 1,604,900 - MCAODC_24435 0.49 +0.4 1,604,938 + MCAODC_24435 0.53 -1.2 1,605,107 + MCAODC_24435 0.69 +0.6 1,605,115 + MCAODC_24435 0.69 -1.0 1,605,115 + MCAODC_24435 0.69 -0.8 1,605,115 + MCAODC_24435 0.69 -0.4 1,605,115 + MCAODC_24435 0.69 +1.1 1,605,115 + MCAODC_24435 0.69 +0.4 1,605,116 - MCAODC_24435 0.70 -0.7 1,605,116 - MCAODC_24435 0.70 +1.2 1,605,116 - MCAODC_24435 0.70 +0.5 1,605,176 - MCAODC_24435 0.75 -1.0 1,605,176 - MCAODC_24435 0.75 -0.2 1,605,176 - MCAODC_24435 0.75 +0.7 1,605,176 - MCAODC_24435 0.75 -0.5 1,605,885 - -2.2 1,606,067 + MCAODC_24440 0.86 -1.6 1,606,067 + MCAODC_24440 0.86 -1.3 1,606,067 + MCAODC_24440 0.86 +0.3 1,606,096 - -0.2 1,606,193 + +0.4 1,606,193 + +0.2 1,606,213 + +0.5 1,606,218 + -0.5 1,606,222 + +0.2 1,606,222 + +0.9 1,606,222 + -0.9 1,606,312 + +1.6 1,606,312 + -0.8 1,606,313 - +1.6 1,606,313 - +0.1 1,606,313 - +0.2 1,606,313 - +1.5 1,606,395 - -0.0 1,606,428 - +1.6 1,606,503 + -1.1 1,606,511 + +0.6 1,606,528 + -0.2 1,606,528 + -0.3 1,606,528 + +0.3 1,606,528 + +0.6 1,606,611 + +0.5 1,606,768 - ybbA MCAODC_24450 0.16 -0.7
Or see this region's nucleotide sequence