Strain Fitness in Escherichia coli ECRC101 around MCAODC_23895

Experiment: Control_ECRC101_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfabG and cadC1 are separated by 687 nucleotidescadC1 and MCAODC_23900 are separated by 4 nucleotidesMCAODC_23900 and eAL are separated by 101 nucleotides MCAODC_23890: fabG - oxidoreductase, at 1,501,330 to 1,502,112 fabG MCAODC_23895: cadC1 - transcriptional regulator, at 1,502,800 to 1,503,612 cadC1 MCAODC_23900: MCAODC_23900 - FidL, at 1,503,617 to 1,504,108 _23900 MCAODC_23905: eAL - EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant), at 1,504,210 to 1,505,820 eAL Position (kb) 1502 1503 1504Strain fitness (log2 ratio) -1 0 1at 1501.858 kb on - strand, within fabGat 1502.069 kb on - strandat 1502.813 kb on + strandat 1502.845 kb on - strandat 1502.882 kb on + strand, within cadC1at 1503.251 kb on + strand, within cadC1at 1504.264 kb on + strandat 1504.566 kb on + strand, within eAL

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101_WM
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1,501,858 - fabG MCAODC_23890 0.67 +0.8
1,502,069 - -0.4
1,502,813 + +0.7
1,502,845 - +0.9
1,502,882 + cadC1 MCAODC_23895 0.10 -0.6
1,503,251 + cadC1 MCAODC_23895 0.55 -0.8
1,504,264 + -1.4
1,504,566 + eAL MCAODC_23905 0.22 +1.1

Or see this region's nucleotide sequence