Strain Fitness in Escherichia coli ECRC101 around MCAODC_23535

Experiment: Control_ECRC101_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_23530 and terW are separated by 17 nucleotidesterW and MCAODC_23540 are separated by 260 nucleotidesMCAODC_23540 and tnpB overlap by 14 nucleotidestnpB and MCAODC_23550 are separated by 81 nucleotides MCAODC_23530: MCAODC_23530 - DUF4236 domain-containing protein, at 1,433,327 to 1,434,535 _23530 MCAODC_23535: terW - tellurium resistance protein TerW, at 1,434,553 to 1,435,020 terW MCAODC_23540: MCAODC_23540 - IS66 family insertion sequence hypothetical protein, at 1,435,281 to 1,435,610 _23540 MCAODC_23545: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 1,435,597 to 1,435,938 tnpB MCAODC_23550: MCAODC_23550 - IS66 family transposase, at 1,436,020 to 1,436,877 _23550 Position (kb) 1434 1435 1436Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1433.676 kb on + strand, within MCAODC_23530at 1433.676 kb on + strand, within MCAODC_23530at 1433.676 kb on + strand, within MCAODC_23530at 1433.677 kb on - strand, within MCAODC_23530at 1433.677 kb on - strand, within MCAODC_23530at 1433.679 kb on - strand, within MCAODC_23530at 1433.679 kb on - strand, within MCAODC_23530at 1433.679 kb on - strand, within MCAODC_23530at 1433.679 kb on - strand, within MCAODC_23530at 1433.741 kb on + strand, within MCAODC_23530at 1433.742 kb on - strand, within MCAODC_23530at 1433.748 kb on + strand, within MCAODC_23530at 1433.748 kb on + strand, within MCAODC_23530at 1433.749 kb on - strand, within MCAODC_23530at 1433.749 kb on - strand, within MCAODC_23530at 1433.940 kb on - strand, within MCAODC_23530at 1434.045 kb on - strand, within MCAODC_23530at 1434.106 kb on - strand, within MCAODC_23530at 1434.117 kb on + strand, within MCAODC_23530at 1434.245 kb on + strand, within MCAODC_23530at 1434.245 kb on + strand, within MCAODC_23530at 1434.245 kb on + strand, within MCAODC_23530at 1434.294 kb on + strand, within MCAODC_23530at 1434.294 kb on + strand, within MCAODC_23530at 1434.298 kb on + strand, within MCAODC_23530at 1434.298 kb on + strand, within MCAODC_23530at 1434.298 kb on + strand, within MCAODC_23530at 1434.298 kb on + strand, within MCAODC_23530at 1434.349 kb on + strand, within MCAODC_23530at 1434.377 kb on + strand, within MCAODC_23530at 1434.377 kb on + strand, within MCAODC_23530at 1434.377 kb on + strand, within MCAODC_23530at 1434.377 kb on + strand, within MCAODC_23530at 1434.379 kb on + strand, within MCAODC_23530at 1434.435 kb on + strandat 1434.496 kb on + strandat 1434.525 kb on + strandat 1434.560 kb on + strandat 1434.689 kb on + strand, within terWat 1434.700 kb on + strand, within terWat 1434.888 kb on - strand, within terWat 1435.074 kb on + strandat 1435.238 kb on + strandat 1435.238 kb on + strandat 1435.276 kb on - strandat 1435.276 kb on - strandat 1435.362 kb on + strand, within MCAODC_23540at 1435.363 kb on - strand, within MCAODC_23540at 1435.363 kb on - strand, within MCAODC_23540at 1435.363 kb on - strand, within MCAODC_23540at 1435.389 kb on - strand, within MCAODC_23540at 1435.389 kb on - strand, within MCAODC_23540at 1435.642 kb on - strand, within tnpBat 1435.672 kb on + strand, within tnpBat 1435.672 kb on + strand, within tnpBat 1435.672 kb on + strand, within tnpBat 1435.672 kb on + strand, within tnpBat 1435.673 kb on - strand, within tnpBat 1435.673 kb on - strand, within tnpBat 1435.731 kb on + strand, within tnpBat 1435.778 kb on + strand, within tnpBat 1435.778 kb on + strand, within tnpBat 1435.779 kb on - strand, within tnpBat 1435.937 kb on - strandat 1436.008 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101_WM
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1,433,676 + MCAODC_23530 0.29 -0.7
1,433,676 + MCAODC_23530 0.29 +0.6
1,433,676 + MCAODC_23530 0.29 +0.7
1,433,677 - MCAODC_23530 0.29 -0.6
1,433,677 - MCAODC_23530 0.29 -2.3
1,433,679 - MCAODC_23530 0.29 +0.7
1,433,679 - MCAODC_23530 0.29 -0.2
1,433,679 - MCAODC_23530 0.29 -1.0
1,433,679 - MCAODC_23530 0.29 +0.5
1,433,741 + MCAODC_23530 0.34 +1.3
1,433,742 - MCAODC_23530 0.34 +0.3
1,433,748 + MCAODC_23530 0.35 -0.3
1,433,748 + MCAODC_23530 0.35 +1.3
1,433,749 - MCAODC_23530 0.35 -1.2
1,433,749 - MCAODC_23530 0.35 -0.3
1,433,940 - MCAODC_23530 0.51 +0.3
1,434,045 - MCAODC_23530 0.59 -1.0
1,434,106 - MCAODC_23530 0.64 -0.7
1,434,117 + MCAODC_23530 0.65 -0.6
1,434,245 + MCAODC_23530 0.76 -0.3
1,434,245 + MCAODC_23530 0.76 -0.0
1,434,245 + MCAODC_23530 0.76 +1.2
1,434,294 + MCAODC_23530 0.80 +1.7
1,434,294 + MCAODC_23530 0.80 -0.3
1,434,298 + MCAODC_23530 0.80 -0.4
1,434,298 + MCAODC_23530 0.80 +0.2
1,434,298 + MCAODC_23530 0.80 -0.1
1,434,298 + MCAODC_23530 0.80 -1.3
1,434,349 + MCAODC_23530 0.85 +0.5
1,434,377 + MCAODC_23530 0.87 -0.9
1,434,377 + MCAODC_23530 0.87 -1.0
1,434,377 + MCAODC_23530 0.87 +0.6
1,434,377 + MCAODC_23530 0.87 +0.8
1,434,379 + MCAODC_23530 0.87 +2.4
1,434,435 + +0.1
1,434,496 + -3.1
1,434,525 + +0.1
1,434,560 + +1.6
1,434,689 + terW MCAODC_23535 0.29 -1.2
1,434,700 + terW MCAODC_23535 0.31 -0.8
1,434,888 - terW MCAODC_23535 0.72 -2.0
1,435,074 + +0.3
1,435,238 + -0.5
1,435,238 + -0.4
1,435,276 - -1.1
1,435,276 - -0.2
1,435,362 + MCAODC_23540 0.25 +1.5
1,435,363 - MCAODC_23540 0.25 +2.6
1,435,363 - MCAODC_23540 0.25 -0.9
1,435,363 - MCAODC_23540 0.25 +0.9
1,435,389 - MCAODC_23540 0.33 -0.5
1,435,389 - MCAODC_23540 0.33 -0.6
1,435,642 - tnpB MCAODC_23545 0.13 +1.3
1,435,672 + tnpB MCAODC_23545 0.22 -0.0
1,435,672 + tnpB MCAODC_23545 0.22 +1.2
1,435,672 + tnpB MCAODC_23545 0.22 +0.2
1,435,672 + tnpB MCAODC_23545 0.22 -0.3
1,435,673 - tnpB MCAODC_23545 0.22 +0.0
1,435,673 - tnpB MCAODC_23545 0.22 -0.1
1,435,731 + tnpB MCAODC_23545 0.39 -0.4
1,435,778 + tnpB MCAODC_23545 0.53 +1.6
1,435,778 + tnpB MCAODC_23545 0.53 -0.1
1,435,779 - tnpB MCAODC_23545 0.53 +1.1
1,435,937 - -0.5
1,436,008 - +0.5

Or see this region's nucleotide sequence