Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_23530 and terW are separated by 17 nucleotides terW and MCAODC_23540 are separated by 260 nucleotides MCAODC_23540 and tnpB overlap by 14 nucleotides tnpB and MCAODC_23550 are separated by 81 nucleotides
MCAODC_23530: MCAODC_23530 - DUF4236 domain-containing protein, at 1,433,327 to 1,434,535
_23530
MCAODC_23535: terW - tellurium resistance protein TerW, at 1,434,553 to 1,435,020
terW
MCAODC_23540: MCAODC_23540 - IS66 family insertion sequence hypothetical protein, at 1,435,281 to 1,435,610
_23540
MCAODC_23545: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 1,435,597 to 1,435,938
tnpB
MCAODC_23550: MCAODC_23550 - IS66 family transposase, at 1,436,020 to 1,436,877
_23550
Position (kb)
1434
1435
1436 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1433.676 kb on + strand, within MCAODC_23530 at 1433.676 kb on + strand, within MCAODC_23530 at 1433.676 kb on + strand, within MCAODC_23530 at 1433.677 kb on - strand, within MCAODC_23530 at 1433.677 kb on - strand, within MCAODC_23530 at 1433.679 kb on - strand, within MCAODC_23530 at 1433.679 kb on - strand, within MCAODC_23530 at 1433.679 kb on - strand, within MCAODC_23530 at 1433.679 kb on - strand, within MCAODC_23530 at 1433.741 kb on + strand, within MCAODC_23530 at 1433.742 kb on - strand, within MCAODC_23530 at 1433.748 kb on + strand, within MCAODC_23530 at 1433.748 kb on + strand, within MCAODC_23530 at 1433.749 kb on - strand, within MCAODC_23530 at 1433.749 kb on - strand, within MCAODC_23530 at 1433.940 kb on - strand, within MCAODC_23530 at 1434.045 kb on - strand, within MCAODC_23530 at 1434.106 kb on - strand, within MCAODC_23530 at 1434.117 kb on + strand, within MCAODC_23530 at 1434.245 kb on + strand, within MCAODC_23530 at 1434.245 kb on + strand, within MCAODC_23530 at 1434.245 kb on + strand, within MCAODC_23530 at 1434.294 kb on + strand, within MCAODC_23530 at 1434.294 kb on + strand, within MCAODC_23530 at 1434.298 kb on + strand, within MCAODC_23530 at 1434.298 kb on + strand, within MCAODC_23530 at 1434.298 kb on + strand, within MCAODC_23530 at 1434.298 kb on + strand, within MCAODC_23530 at 1434.349 kb on + strand, within MCAODC_23530 at 1434.377 kb on + strand, within MCAODC_23530 at 1434.377 kb on + strand, within MCAODC_23530 at 1434.377 kb on + strand, within MCAODC_23530 at 1434.377 kb on + strand, within MCAODC_23530 at 1434.379 kb on + strand, within MCAODC_23530 at 1434.435 kb on + strand at 1434.496 kb on + strand at 1434.525 kb on + strand at 1434.560 kb on + strand at 1434.689 kb on + strand, within terW at 1434.700 kb on + strand, within terW at 1434.888 kb on - strand, within terW at 1435.074 kb on + strand at 1435.238 kb on + strand at 1435.238 kb on + strand at 1435.276 kb on - strand at 1435.276 kb on - strand at 1435.362 kb on + strand, within MCAODC_23540 at 1435.363 kb on - strand, within MCAODC_23540 at 1435.363 kb on - strand, within MCAODC_23540 at 1435.363 kb on - strand, within MCAODC_23540 at 1435.389 kb on - strand, within MCAODC_23540 at 1435.389 kb on - strand, within MCAODC_23540 at 1435.642 kb on - strand, within tnpB at 1435.672 kb on + strand, within tnpB at 1435.672 kb on + strand, within tnpB at 1435.672 kb on + strand, within tnpB at 1435.672 kb on + strand, within tnpB at 1435.673 kb on - strand, within tnpB at 1435.673 kb on - strand, within tnpB at 1435.731 kb on + strand, within tnpB at 1435.778 kb on + strand, within tnpB at 1435.778 kb on + strand, within tnpB at 1435.779 kb on - strand, within tnpB at 1435.937 kb on - strand at 1436.008 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101_WM remove 1,433,676 + MCAODC_23530 0.29 -0.7 1,433,676 + MCAODC_23530 0.29 +0.6 1,433,676 + MCAODC_23530 0.29 +0.7 1,433,677 - MCAODC_23530 0.29 -0.6 1,433,677 - MCAODC_23530 0.29 -2.3 1,433,679 - MCAODC_23530 0.29 +0.7 1,433,679 - MCAODC_23530 0.29 -0.2 1,433,679 - MCAODC_23530 0.29 -1.0 1,433,679 - MCAODC_23530 0.29 +0.5 1,433,741 + MCAODC_23530 0.34 +1.3 1,433,742 - MCAODC_23530 0.34 +0.3 1,433,748 + MCAODC_23530 0.35 -0.3 1,433,748 + MCAODC_23530 0.35 +1.3 1,433,749 - MCAODC_23530 0.35 -1.2 1,433,749 - MCAODC_23530 0.35 -0.3 1,433,940 - MCAODC_23530 0.51 +0.3 1,434,045 - MCAODC_23530 0.59 -1.0 1,434,106 - MCAODC_23530 0.64 -0.7 1,434,117 + MCAODC_23530 0.65 -0.6 1,434,245 + MCAODC_23530 0.76 -0.3 1,434,245 + MCAODC_23530 0.76 -0.0 1,434,245 + MCAODC_23530 0.76 +1.2 1,434,294 + MCAODC_23530 0.80 +1.7 1,434,294 + MCAODC_23530 0.80 -0.3 1,434,298 + MCAODC_23530 0.80 -0.4 1,434,298 + MCAODC_23530 0.80 +0.2 1,434,298 + MCAODC_23530 0.80 -0.1 1,434,298 + MCAODC_23530 0.80 -1.3 1,434,349 + MCAODC_23530 0.85 +0.5 1,434,377 + MCAODC_23530 0.87 -0.9 1,434,377 + MCAODC_23530 0.87 -1.0 1,434,377 + MCAODC_23530 0.87 +0.6 1,434,377 + MCAODC_23530 0.87 +0.8 1,434,379 + MCAODC_23530 0.87 +2.4 1,434,435 + +0.1 1,434,496 + -3.1 1,434,525 + +0.1 1,434,560 + +1.6 1,434,689 + terW MCAODC_23535 0.29 -1.2 1,434,700 + terW MCAODC_23535 0.31 -0.8 1,434,888 - terW MCAODC_23535 0.72 -2.0 1,435,074 + +0.3 1,435,238 + -0.5 1,435,238 + -0.4 1,435,276 - -1.1 1,435,276 - -0.2 1,435,362 + MCAODC_23540 0.25 +1.5 1,435,363 - MCAODC_23540 0.25 +2.6 1,435,363 - MCAODC_23540 0.25 -0.9 1,435,363 - MCAODC_23540 0.25 +0.9 1,435,389 - MCAODC_23540 0.33 -0.5 1,435,389 - MCAODC_23540 0.33 -0.6 1,435,642 - tnpB MCAODC_23545 0.13 +1.3 1,435,672 + tnpB MCAODC_23545 0.22 -0.0 1,435,672 + tnpB MCAODC_23545 0.22 +1.2 1,435,672 + tnpB MCAODC_23545 0.22 +0.2 1,435,672 + tnpB MCAODC_23545 0.22 -0.3 1,435,673 - tnpB MCAODC_23545 0.22 +0.0 1,435,673 - tnpB MCAODC_23545 0.22 -0.1 1,435,731 + tnpB MCAODC_23545 0.39 -0.4 1,435,778 + tnpB MCAODC_23545 0.53 +1.6 1,435,778 + tnpB MCAODC_23545 0.53 -0.1 1,435,779 - tnpB MCAODC_23545 0.53 +1.1 1,435,937 - -0.5 1,436,008 - +0.5
Or see this region's nucleotide sequence