Strain Fitness in Escherichia coli ECRC101 around MCAODC_23300

Experiment: Control_ECRC101_WM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMCAODC_23295 and MCAODC_23300 overlap by 4 nucleotidesMCAODC_23300 and MCAODC_23305 overlap by 4 nucleotides MCAODC_23295: MCAODC_23295 - phospholipase, at 1,389,016 to 1,390,086 _23295 MCAODC_23300: MCAODC_23300 - chemotaxis protein, at 1,390,083 to 1,390,988 _23300 MCAODC_23305: MCAODC_23305 - dGTPase, at 1,390,985 to 1,393,369 _23305 Position (kb) 1390 1391Strain fitness (log2 ratio) -2 -1 0 1at 1390.414 kb on - strand, within MCAODC_23300at 1390.414 kb on - strand, within MCAODC_23300at 1391.285 kb on - strand, within MCAODC_23305at 1391.765 kb on - strand, within MCAODC_23305at 1391.921 kb on - strand, within MCAODC_23305

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101_WM
remove
1,390,414 - MCAODC_23300 0.37 -1.7
1,390,414 - MCAODC_23300 0.37 -2.1
1,391,285 - MCAODC_23305 0.13 -0.7
1,391,765 - MCAODC_23305 0.33 +1.0
1,391,921 - MCAODC_23305 0.39 +0.5

Or see this region's nucleotide sequence