Strain Fitness in Escherichia coli ECRC101 around MCAODC_22745

Experiment: Control_ECRC101_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_22735 and MCAODC_22740 are separated by 33 nucleotidesMCAODC_22740 and eCs1768 are separated by 31 nucleotideseCs1768 and MCAODC_22750 are separated by 68 nucleotidesMCAODC_22750 and ydaS overlap by 17 nucleotidesydaS and MCAODC_22760 are separated by 124 nucleotides MCAODC_22735: MCAODC_22735 - DUF1627 domain-containing protein, at 1,292,172 to 1,292,888 _22735 MCAODC_22740: MCAODC_22740 - replication protein, at 1,292,922 to 1,293,344 _22740 MCAODC_22745: eCs1768 - phage replisome organizer, at 1,293,376 to 1,294,413 eCs1768 MCAODC_22750: MCAODC_22750 - Rha family transcriptional regulator, at 1,294,482 to 1,294,907 _22750 MCAODC_22755: ydaS - transcriptional regulator, at 1,294,891 to 1,295,214 ydaS MCAODC_22760: MCAODC_22760 - Prophage repressor RacR, at 1,295,339 to 1,295,815 _22760 Position (kb) 1293 1294 1295Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1292.609 kb on + strand, within MCAODC_22735at 1293.919 kb on - strand, within eCs1768at 1293.945 kb on + strand, within eCs1768at 1293.951 kb on + strand, within eCs1768at 1293.951 kb on + strand, within eCs1768at 1294.249 kb on + strand, within eCs1768at 1294.999 kb on + strand, within ydaSat 1294.999 kb on + strand, within ydaSat 1295.003 kb on + strand, within ydaSat 1295.003 kb on + strand, within ydaSat 1295.004 kb on - strand, within ydaSat 1295.004 kb on - strand, within ydaSat 1295.098 kb on + strand, within ydaSat 1295.098 kb on + strand, within ydaSat 1295.098 kb on + strand, within ydaSat 1295.140 kb on + strand, within ydaSat 1295.141 kb on - strand, within ydaSat 1295.141 kb on - strand, within ydaSat 1295.149 kb on - strand, within ydaSat 1295.198 kb on + strandat 1295.198 kb on + strandat 1295.198 kb on + strandat 1295.199 kb on - strandat 1295.199 kb on - strandat 1295.199 kb on - strandat 1295.322 kb on + strandat 1295.333 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101_WM
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1,292,609 + MCAODC_22735 0.61 +0.2
1,293,919 - eCs1768 MCAODC_22745 0.52 -0.2
1,293,945 + eCs1768 MCAODC_22745 0.55 -0.7
1,293,951 + eCs1768 MCAODC_22745 0.55 -0.3
1,293,951 + eCs1768 MCAODC_22745 0.55 -2.2
1,294,249 + eCs1768 MCAODC_22745 0.84 -1.2
1,294,999 + ydaS MCAODC_22755 0.33 -2.8
1,294,999 + ydaS MCAODC_22755 0.33 +1.3
1,295,003 + ydaS MCAODC_22755 0.35 -1.3
1,295,003 + ydaS MCAODC_22755 0.35 +1.8
1,295,004 - ydaS MCAODC_22755 0.35 -3.7
1,295,004 - ydaS MCAODC_22755 0.35 -2.1
1,295,098 + ydaS MCAODC_22755 0.64 +1.3
1,295,098 + ydaS MCAODC_22755 0.64 -0.0
1,295,098 + ydaS MCAODC_22755 0.64 -0.2
1,295,140 + ydaS MCAODC_22755 0.77 +0.6
1,295,141 - ydaS MCAODC_22755 0.77 +1.1
1,295,141 - ydaS MCAODC_22755 0.77 -0.0
1,295,149 - ydaS MCAODC_22755 0.80 -2.7
1,295,198 + -0.7
1,295,198 + +2.2
1,295,198 + +0.9
1,295,199 - +0.1
1,295,199 - +0.7
1,295,199 - +1.2
1,295,322 + -0.7
1,295,333 + -0.7

Or see this region's nucleotide sequence