Strain Fitness in Escherichia coli ECRC101 around MCAODC_20475

Experiment: Control_ECRC101_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgndA and perB are separated by 200 nucleotides MCAODC_20470: gndA - NADP-dependent phosphogluconate dehydrogenase, at 899,815 to 901,221 gndA MCAODC_20475: perB - GDP-perosamine N-acetyltransferase, at 901,422 to 902,087 perB Position (kb) 901 902 903Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 900.480 kb on - strand, within gndAat 900.520 kb on - strand, within gndAat 900.553 kb on - strand, within gndAat 900.565 kb on - strand, within gndAat 900.621 kb on - strand, within gndAat 900.621 kb on - strand, within gndAat 900.680 kb on + strand, within gndAat 900.705 kb on + strand, within gndAat 900.707 kb on + strand, within gndAat 900.708 kb on - strand, within gndAat 900.708 kb on - strand, within gndAat 900.708 kb on - strand, within gndAat 900.708 kb on - strand, within gndAat 900.708 kb on - strand, within gndAat 900.708 kb on - strand, within gndAat 900.712 kb on - strand, within gndAat 900.770 kb on - strand, within gndAat 900.770 kb on - strand, within gndAat 900.862 kb on - strand, within gndAat 900.916 kb on - strand, within gndAat 900.973 kb on - strand, within gndAat 901.058 kb on + strand, within gndAat 901.059 kb on - strand, within gndAat 901.062 kb on - strand, within gndAat 901.062 kb on - strand, within gndAat 901.141 kb on - strandat 901.141 kb on - strandat 901.141 kb on - strandat 901.141 kb on - strandat 901.253 kb on - strandat 901.332 kb on - strandat 901.477 kb on - strandat 901.497 kb on - strand, within perBat 901.573 kb on - strand, within perBat 901.588 kb on - strand, within perBat 901.592 kb on - strand, within perBat 901.592 kb on - strand, within perBat 901.688 kb on - strand, within perBat 901.768 kb on - strand, within perBat 901.776 kb on - strand, within perBat 902.108 kb on - strandat 902.222 kb on - strandat 902.297 kb on - strandat 902.417 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101_WM
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900,480 - gndA MCAODC_20470 0.47 -0.6
900,520 - gndA MCAODC_20470 0.50 +0.0
900,553 - gndA MCAODC_20470 0.52 -0.8
900,565 - gndA MCAODC_20470 0.53 -0.9
900,621 - gndA MCAODC_20470 0.57 +0.9
900,621 - gndA MCAODC_20470 0.57 -0.0
900,680 + gndA MCAODC_20470 0.61 -0.3
900,705 + gndA MCAODC_20470 0.63 +1.4
900,707 + gndA MCAODC_20470 0.63 +4.4
900,708 - gndA MCAODC_20470 0.63 -1.0
900,708 - gndA MCAODC_20470 0.63 -2.4
900,708 - gndA MCAODC_20470 0.63 +0.6
900,708 - gndA MCAODC_20470 0.63 +0.4
900,708 - gndA MCAODC_20470 0.63 +0.6
900,708 - gndA MCAODC_20470 0.63 +0.4
900,712 - gndA MCAODC_20470 0.64 -0.8
900,770 - gndA MCAODC_20470 0.68 -2.8
900,770 - gndA MCAODC_20470 0.68 -0.1
900,862 - gndA MCAODC_20470 0.74 -2.0
900,916 - gndA MCAODC_20470 0.78 -0.5
900,973 - gndA MCAODC_20470 0.82 -0.9
901,058 + gndA MCAODC_20470 0.88 -2.0
901,059 - gndA MCAODC_20470 0.88 -2.6
901,062 - gndA MCAODC_20470 0.89 -0.5
901,062 - gndA MCAODC_20470 0.89 -0.9
901,141 - -1.1
901,141 - -0.9
901,141 - +0.2
901,141 - -1.4
901,253 - +2.4
901,332 - -1.0
901,477 - +2.4
901,497 - perB MCAODC_20475 0.11 -1.7
901,573 - perB MCAODC_20475 0.23 -1.7
901,588 - perB MCAODC_20475 0.25 -2.6
901,592 - perB MCAODC_20475 0.26 -2.0
901,592 - perB MCAODC_20475 0.26 -0.8
901,688 - perB MCAODC_20475 0.40 -3.7
901,768 - perB MCAODC_20475 0.52 -2.7
901,776 - perB MCAODC_20475 0.53 -3.0
902,108 - +0.7
902,222 - -1.0
902,297 - +0.7
902,417 + +0.4

Or see this region's nucleotide sequence