Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt manA and ydgA are separated by 100 nucleotides ydgA and MCAODC_17780 are separated by 44 nucleotides MCAODC_17780 and uidC are separated by 14 nucleotides
MCAODC_17770: manA - mannose-6-phosphate isomerase, at 417,646 to 418,821
manA
MCAODC_17775: ydgA - Protein YdgA, at 418,922 to 420,430
ydgA
MCAODC_17780: MCAODC_17780 - Putative outer membrane porin protein, at 420,475 to 420,696
_17780
MCAODC_17785: uidC - glucuronide uptake porin UidC, at 420,711 to 421,739
uidC
Position (kb) 418
419
420
421 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 418.023 kb on + strand, within manA at 418.023 kb on + strand, within manA at 418.819 kb on + strand at 418.852 kb on + strand at 418.859 kb on - strand at 418.921 kb on + strand at 418.922 kb on - strand at 418.994 kb on - strand at 419.411 kb on + strand, within ydgA at 419.411 kb on + strand, within ydgA at 419.485 kb on + strand, within ydgA at 419.537 kb on + strand, within ydgA at 419.760 kb on + strand, within ydgA at 419.992 kb on + strand, within ydgA at 420.105 kb on + strand, within ydgA at 420.293 kb on - strand at 420.316 kb on + strand at 420.316 kb on + strand at 420.316 kb on + strand at 420.316 kb on + strand at 420.316 kb on + strand at 420.316 kb on + strand at 420.317 kb on - strand at 420.373 kb on + strand at 420.373 kb on + strand at 420.393 kb on + strand at 420.393 kb on + strand at 420.502 kb on - strand, within MCAODC_17780 at 420.522 kb on - strand, within MCAODC_17780 at 420.544 kb on - strand, within MCAODC_17780 at 420.637 kb on + strand, within MCAODC_17780 at 420.638 kb on - strand, within MCAODC_17780 at 420.638 kb on - strand, within MCAODC_17780 at 420.717 kb on + strand at 420.868 kb on - strand, within uidC at 420.936 kb on - strand, within uidC at 420.936 kb on - strand, within uidC at 420.995 kb on - strand, within uidC at 421.028 kb on + strand, within uidC at 421.292 kb on + strand, within uidC at 421.293 kb on - strand, within uidC at 421.293 kb on - strand, within uidC at 421.333 kb on - strand, within uidC
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101_WM remove 418,023 + manA MCAODC_17770 0.32 +1.3 418,023 + manA MCAODC_17770 0.32 +0.4 418,819 + -0.7 418,852 + +0.6 418,859 - +1.6 418,921 + -0.3 418,922 - -0.9 418,994 - +0.1 419,411 + ydgA MCAODC_17775 0.32 -0.4 419,411 + ydgA MCAODC_17775 0.32 -1.8 419,485 + ydgA MCAODC_17775 0.37 +1.3 419,537 + ydgA MCAODC_17775 0.41 +1.2 419,760 + ydgA MCAODC_17775 0.56 -0.3 419,992 + ydgA MCAODC_17775 0.71 -1.7 420,105 + ydgA MCAODC_17775 0.78 -0.9 420,293 - -2.0 420,316 + +1.2 420,316 + -1.3 420,316 + +0.9 420,316 + -1.6 420,316 + -0.6 420,316 + +2.9 420,317 - -1.4 420,373 + +0.1 420,373 + -0.8 420,393 + -0.7 420,393 + +2.2 420,502 - MCAODC_17780 0.12 -0.9 420,522 - MCAODC_17780 0.21 -1.6 420,544 - MCAODC_17780 0.31 +0.4 420,637 + MCAODC_17780 0.73 -0.9 420,638 - MCAODC_17780 0.73 +0.3 420,638 - MCAODC_17780 0.73 -1.0 420,717 + -3.1 420,868 - uidC MCAODC_17785 0.15 +1.3 420,936 - uidC MCAODC_17785 0.22 +0.4 420,936 - uidC MCAODC_17785 0.22 -0.0 420,995 - uidC MCAODC_17785 0.28 -0.5 421,028 + uidC MCAODC_17785 0.31 +1.0 421,292 + uidC MCAODC_17785 0.56 +1.3 421,293 - uidC MCAODC_17785 0.57 -0.1 421,293 - uidC MCAODC_17785 0.57 +0.1 421,333 - uidC MCAODC_17785 0.60 -1.0
Or see this region's nucleotide sequence