Strain Fitness in Escherichia coli ECRC101 around MCAODC_15510

Experiment: Control_ECRC101_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntssb and yubL are separated by 56 nucleotidesyubL and yubM are separated by 65 nucleotides MCAODC_15505: ssb - single-stranded DNA-binding protein, at 82,685 to 83,137 ssb MCAODC_15510: yubL - UPF0401 protein YubL, at 83,194 to 83,427 yubL MCAODC_15515: yubM - Uncharacterized protein YubM, at 83,493 to 85,451 yubM Position (kb) 83 84Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 82.394 kb on - strandat 82.394 kb on - strandat 82.394 kb on - strandat 82.582 kb on - strandat 82.703 kb on - strandat 82.703 kb on - strandat 82.719 kb on + strandat 82.751 kb on + strand, within ssbat 82.752 kb on - strand, within ssbat 82.752 kb on - strand, within ssbat 82.895 kb on + strand, within ssbat 82.919 kb on + strand, within ssbat 82.964 kb on - strand, within ssbat 82.973 kb on + strand, within ssbat 82.974 kb on - strand, within ssbat 82.993 kb on + strand, within ssbat 82.993 kb on + strand, within ssbat 82.994 kb on - strand, within ssbat 83.022 kb on + strand, within ssbat 83.204 kb on - strandat 83.213 kb on + strandat 83.213 kb on + strandat 83.214 kb on - strandat 83.332 kb on - strand, within yubLat 83.418 kb on + strandat 83.419 kb on - strandat 83.421 kb on + strandat 83.421 kb on + strandat 83.421 kb on + strandat 83.422 kb on - strandat 83.425 kb on + strandat 83.426 kb on - strandat 83.426 kb on - strandat 83.467 kb on + strandat 83.468 kb on - strandat 83.468 kb on - strandat 83.468 kb on - strandat 83.468 kb on - strandat 83.468 kb on - strandat 83.485 kb on + strandat 83.486 kb on - strandat 83.486 kb on - strandat 83.486 kb on - strandat 83.486 kb on - strandat 83.486 kb on - strandat 83.488 kb on + strandat 83.488 kb on + strandat 83.488 kb on + strandat 83.488 kb on + strandat 83.488 kb on + strandat 83.488 kb on + strandat 83.488 kb on + strandat 83.488 kb on + strandat 83.489 kb on - strandat 83.489 kb on - strandat 83.489 kb on - strandat 83.489 kb on - strandat 83.489 kb on - strandat 83.489 kb on - strandat 83.489 kb on - strandat 83.489 kb on - strandat 83.489 kb on - strandat 83.489 kb on - strandat 83.489 kb on - strandat 83.489 kb on - strandat 83.489 kb on - strandat 83.489 kb on - strandat 83.489 kb on - strandat 83.489 kb on - strandat 83.489 kb on - strandat 83.492 kb on + strandat 83.492 kb on + strandat 83.493 kb on - strandat 83.501 kb on + strandat 83.510 kb on + strandat 83.510 kb on + strandat 83.528 kb on + strandat 83.541 kb on - strandat 83.541 kb on - strandat 83.541 kb on - strandat 83.624 kb on + strandat 83.625 kb on - strandat 83.625 kb on - strandat 83.693 kb on + strand, within yubMat 83.710 kb on + strand, within yubMat 83.711 kb on - strand, within yubMat 83.711 kb on - strand, within yubMat 84.172 kb on + strand, within yubMat 84.173 kb on - strand, within yubMat 84.173 kb on - strand, within yubMat 84.227 kb on + strand, within yubMat 84.227 kb on + strand, within yubMat 84.227 kb on + strand, within yubMat 84.228 kb on - strand, within yubMat 84.228 kb on - strand, within yubMat 84.251 kb on + strand, within yubMat 84.252 kb on - strand, within yubMat 84.252 kb on - strand, within yubMat 84.252 kb on - strand, within yubMat 84.252 kb on - strand, within yubMat 84.306 kb on + strand, within yubMat 84.306 kb on + strand, within yubMat 84.306 kb on + strand, within yubMat 84.306 kb on + strand, within yubMat 84.306 kb on + strand, within yubMat 84.307 kb on - strand, within yubMat 84.407 kb on + strand, within yubMat 84.407 kb on + strand, within yubMat 84.408 kb on - strand, within yubM

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101_WM
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82,394 - +1.9
82,394 - -3.3
82,394 - +0.1
82,582 - -1.1
82,703 - -0.2
82,703 - +0.8
82,719 + +2.9
82,751 + ssb MCAODC_15505 0.15 +0.8
82,752 - ssb MCAODC_15505 0.15 -1.1
82,752 - ssb MCAODC_15505 0.15 +0.3
82,895 + ssb MCAODC_15505 0.46 -0.7
82,919 + ssb MCAODC_15505 0.52 -1.0
82,964 - ssb MCAODC_15505 0.62 +0.2
82,973 + ssb MCAODC_15505 0.64 -0.8
82,974 - ssb MCAODC_15505 0.64 +1.5
82,993 + ssb MCAODC_15505 0.68 +0.4
82,993 + ssb MCAODC_15505 0.68 +1.2
82,994 - ssb MCAODC_15505 0.68 +2.9
83,022 + ssb MCAODC_15505 0.74 -1.2
83,204 - -0.6
83,213 + +0.6
83,213 + +0.5
83,214 - -1.4
83,332 - yubL MCAODC_15510 0.59 +0.4
83,418 + +0.4
83,419 - +0.4
83,421 + -0.3
83,421 + +1.1
83,421 + -1.2
83,422 - +0.1
83,425 + +0.1
83,426 - -0.5
83,426 - -0.3
83,467 + +1.9
83,468 - +2.9
83,468 - +2.9
83,468 - +0.3
83,468 - -2.1
83,468 - +1.1
83,485 + +1.1
83,486 - +0.4
83,486 - +0.4
83,486 - -0.7
83,486 - +0.6
83,486 - +0.8
83,488 + -0.2
83,488 + +1.2
83,488 + +1.0
83,488 + -0.4
83,488 + -2.6
83,488 + -1.2
83,488 + -1.2
83,488 + -0.8
83,489 - +0.0
83,489 - +2.2
83,489 - +0.5
83,489 - +0.4
83,489 - +0.8
83,489 - +0.5
83,489 - -0.6
83,489 - +0.6
83,489 - +1.7
83,489 - +1.4
83,489 - -0.1
83,489 - -0.8
83,489 - +0.5
83,489 - -1.2
83,489 - +0.7
83,489 - +1.6
83,489 - -0.1
83,492 + -1.1
83,492 + -1.3
83,493 - +0.4
83,501 + -1.4
83,510 + +0.3
83,510 + +2.9
83,528 + +0.1
83,541 - -1.1
83,541 - -0.7
83,541 - -2.4
83,624 + +0.4
83,625 - -1.0
83,625 - +0.1
83,693 + yubM MCAODC_15515 0.10 -0.7
83,710 + yubM MCAODC_15515 0.11 -1.1
83,711 - yubM MCAODC_15515 0.11 -0.5
83,711 - yubM MCAODC_15515 0.11 -0.2
84,172 + yubM MCAODC_15515 0.35 -2.0
84,173 - yubM MCAODC_15515 0.35 -1.5
84,173 - yubM MCAODC_15515 0.35 -0.4
84,227 + yubM MCAODC_15515 0.37 -0.9
84,227 + yubM MCAODC_15515 0.37 +1.9
84,227 + yubM MCAODC_15515 0.37 +2.9
84,228 - yubM MCAODC_15515 0.38 -1.0
84,228 - yubM MCAODC_15515 0.38 +0.6
84,251 + yubM MCAODC_15515 0.39 +0.8
84,252 - yubM MCAODC_15515 0.39 -0.8
84,252 - yubM MCAODC_15515 0.39 +0.6
84,252 - yubM MCAODC_15515 0.39 +1.6
84,252 - yubM MCAODC_15515 0.39 +1.9
84,306 + yubM MCAODC_15515 0.42 -1.6
84,306 + yubM MCAODC_15515 0.42 -0.7
84,306 + yubM MCAODC_15515 0.42 -0.8
84,306 + yubM MCAODC_15515 0.42 -0.3
84,306 + yubM MCAODC_15515 0.42 -0.8
84,307 - yubM MCAODC_15515 0.42 -0.9
84,407 + yubM MCAODC_15515 0.47 +0.5
84,407 + yubM MCAODC_15515 0.47 +1.6
84,408 - yubM MCAODC_15515 0.47 +0.9

Or see this region's nucleotide sequence