Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt truA and MCAODC_13715 are separated by 82 nucleotides MCAODC_13715 and accD are separated by 155 nucleotides accD and folC are separated by 69 nucleotides
MCAODC_13710: truA - aspartate-semialdehyde dehydrogenase, at 2,685,641 to 2,686,453
truA
MCAODC_13715: MCAODC_13715 - Protein DedA, at 2,686,536 to 2,687,195
_13715
MCAODC_13720: accD - acetyl-CoA carboxylase, carboxyltransferase subunit beta, at 2,687,351 to 2,688,265
accD
MCAODC_13725: folC - bifunctional tetrahydrofolate synthase/dihydrofolate synthase, at 2,688,335 to 2,689,603
folC
Position (kb)
2687
2688
2689 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2686.460 kb on + strand at 2686.460 kb on + strand at 2686.461 kb on - strand at 2686.493 kb on + strand at 2686.494 kb on - strand at 2686.494 kb on - strand at 2686.497 kb on + strand at 2686.498 kb on - strand at 2686.519 kb on - strand at 2686.535 kb on + strand at 2686.535 kb on + strand at 2686.536 kb on - strand at 2686.623 kb on + strand, within MCAODC_13715 at 2686.624 kb on - strand, within MCAODC_13715 at 2686.751 kb on + strand, within MCAODC_13715 at 2686.751 kb on + strand, within MCAODC_13715 at 2686.751 kb on + strand, within MCAODC_13715 at 2686.751 kb on + strand, within MCAODC_13715 at 2686.803 kb on + strand, within MCAODC_13715 at 2686.804 kb on - strand, within MCAODC_13715 at 2686.804 kb on - strand, within MCAODC_13715 at 2686.804 kb on - strand, within MCAODC_13715 at 2686.835 kb on - strand, within MCAODC_13715 at 2686.872 kb on + strand, within MCAODC_13715 at 2686.922 kb on + strand, within MCAODC_13715 at 2687.010 kb on + strand, within MCAODC_13715 at 2687.010 kb on + strand, within MCAODC_13715 at 2687.010 kb on + strand, within MCAODC_13715 at 2687.011 kb on - strand, within MCAODC_13715 at 2687.011 kb on - strand, within MCAODC_13715 at 2687.011 kb on - strand, within MCAODC_13715 at 2687.011 kb on - strand, within MCAODC_13715 at 2687.011 kb on - strand, within MCAODC_13715 at 2687.012 kb on + strand, within MCAODC_13715 at 2687.012 kb on + strand, within MCAODC_13715 at 2687.012 kb on + strand, within MCAODC_13715 at 2687.012 kb on + strand, within MCAODC_13715 at 2687.013 kb on - strand, within MCAODC_13715 at 2687.052 kb on + strand, within MCAODC_13715 at 2687.053 kb on - strand, within MCAODC_13715 at 2687.053 kb on - strand, within MCAODC_13715 at 2687.099 kb on + strand, within MCAODC_13715 at 2687.099 kb on + strand, within MCAODC_13715 at 2687.099 kb on + strand, within MCAODC_13715 at 2687.155 kb on + strand at 2687.200 kb on + strand at 2687.848 kb on + strand, within accD at 2688.305 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101_WM remove 2,686,460 + +1.0 2,686,460 + -0.7 2,686,461 - +0.1 2,686,493 + +0.9 2,686,494 - -0.9 2,686,494 - -1.5 2,686,497 + +1.4 2,686,498 - +0.5 2,686,519 - -0.1 2,686,535 + -0.3 2,686,535 + +0.5 2,686,536 - +0.7 2,686,623 + MCAODC_13715 0.13 -0.3 2,686,624 - MCAODC_13715 0.13 -1.1 2,686,751 + MCAODC_13715 0.33 +0.5 2,686,751 + MCAODC_13715 0.33 +1.3 2,686,751 + MCAODC_13715 0.33 +0.6 2,686,751 + MCAODC_13715 0.33 +0.4 2,686,803 + MCAODC_13715 0.40 +0.9 2,686,804 - MCAODC_13715 0.41 +2.0 2,686,804 - MCAODC_13715 0.41 +0.4 2,686,804 - MCAODC_13715 0.41 -0.5 2,686,835 - MCAODC_13715 0.45 +0.7 2,686,872 + MCAODC_13715 0.51 +0.0 2,686,922 + MCAODC_13715 0.58 -1.0 2,687,010 + MCAODC_13715 0.72 +0.5 2,687,010 + MCAODC_13715 0.72 -0.5 2,687,010 + MCAODC_13715 0.72 +0.5 2,687,011 - MCAODC_13715 0.72 -0.3 2,687,011 - MCAODC_13715 0.72 -1.6 2,687,011 - MCAODC_13715 0.72 -1.2 2,687,011 - MCAODC_13715 0.72 +0.3 2,687,011 - MCAODC_13715 0.72 +1.1 2,687,012 + MCAODC_13715 0.72 +0.8 2,687,012 + MCAODC_13715 0.72 -0.8 2,687,012 + MCAODC_13715 0.72 +0.6 2,687,012 + MCAODC_13715 0.72 +0.5 2,687,013 - MCAODC_13715 0.72 +1.5 2,687,052 + MCAODC_13715 0.78 -1.1 2,687,053 - MCAODC_13715 0.78 -1.5 2,687,053 - MCAODC_13715 0.78 +1.3 2,687,099 + MCAODC_13715 0.85 -0.1 2,687,099 + MCAODC_13715 0.85 -0.8 2,687,099 + MCAODC_13715 0.85 -0.2 2,687,155 + +0.6 2,687,200 + -0.3 2,687,848 + accD MCAODC_13720 0.54 -2.3 2,688,305 + -0.0
Or see this region's nucleotide sequence