Strain Fitness in Escherichia coli ECRC101 around MCAODC_13720

Experiment: Control_ECRC101_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttruA and MCAODC_13715 are separated by 82 nucleotidesMCAODC_13715 and accD are separated by 155 nucleotidesaccD and folC are separated by 69 nucleotides MCAODC_13710: truA - aspartate-semialdehyde dehydrogenase, at 2,685,641 to 2,686,453 truA MCAODC_13715: MCAODC_13715 - Protein DedA, at 2,686,536 to 2,687,195 _13715 MCAODC_13720: accD - acetyl-CoA carboxylase, carboxyltransferase subunit beta, at 2,687,351 to 2,688,265 accD MCAODC_13725: folC - bifunctional tetrahydrofolate synthase/dihydrofolate synthase, at 2,688,335 to 2,689,603 folC Position (kb) 2687 2688 2689Strain fitness (log2 ratio) -2 -1 0 1 2at 2686.460 kb on + strandat 2686.460 kb on + strandat 2686.461 kb on - strandat 2686.493 kb on + strandat 2686.494 kb on - strandat 2686.494 kb on - strandat 2686.497 kb on + strandat 2686.498 kb on - strandat 2686.519 kb on - strandat 2686.535 kb on + strandat 2686.535 kb on + strandat 2686.536 kb on - strandat 2686.623 kb on + strand, within MCAODC_13715at 2686.624 kb on - strand, within MCAODC_13715at 2686.751 kb on + strand, within MCAODC_13715at 2686.751 kb on + strand, within MCAODC_13715at 2686.751 kb on + strand, within MCAODC_13715at 2686.751 kb on + strand, within MCAODC_13715at 2686.803 kb on + strand, within MCAODC_13715at 2686.804 kb on - strand, within MCAODC_13715at 2686.804 kb on - strand, within MCAODC_13715at 2686.804 kb on - strand, within MCAODC_13715at 2686.835 kb on - strand, within MCAODC_13715at 2686.872 kb on + strand, within MCAODC_13715at 2686.922 kb on + strand, within MCAODC_13715at 2687.010 kb on + strand, within MCAODC_13715at 2687.010 kb on + strand, within MCAODC_13715at 2687.010 kb on + strand, within MCAODC_13715at 2687.011 kb on - strand, within MCAODC_13715at 2687.011 kb on - strand, within MCAODC_13715at 2687.011 kb on - strand, within MCAODC_13715at 2687.011 kb on - strand, within MCAODC_13715at 2687.011 kb on - strand, within MCAODC_13715at 2687.012 kb on + strand, within MCAODC_13715at 2687.012 kb on + strand, within MCAODC_13715at 2687.012 kb on + strand, within MCAODC_13715at 2687.012 kb on + strand, within MCAODC_13715at 2687.013 kb on - strand, within MCAODC_13715at 2687.052 kb on + strand, within MCAODC_13715at 2687.053 kb on - strand, within MCAODC_13715at 2687.053 kb on - strand, within MCAODC_13715at 2687.099 kb on + strand, within MCAODC_13715at 2687.099 kb on + strand, within MCAODC_13715at 2687.099 kb on + strand, within MCAODC_13715at 2687.155 kb on + strandat 2687.200 kb on + strandat 2687.848 kb on + strand, within accDat 2688.305 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101_WM
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2,686,460 + +1.0
2,686,460 + -0.7
2,686,461 - +0.1
2,686,493 + +0.9
2,686,494 - -0.9
2,686,494 - -1.5
2,686,497 + +1.4
2,686,498 - +0.5
2,686,519 - -0.1
2,686,535 + -0.3
2,686,535 + +0.5
2,686,536 - +0.7
2,686,623 + MCAODC_13715 0.13 -0.3
2,686,624 - MCAODC_13715 0.13 -1.1
2,686,751 + MCAODC_13715 0.33 +0.5
2,686,751 + MCAODC_13715 0.33 +1.3
2,686,751 + MCAODC_13715 0.33 +0.6
2,686,751 + MCAODC_13715 0.33 +0.4
2,686,803 + MCAODC_13715 0.40 +0.9
2,686,804 - MCAODC_13715 0.41 +2.0
2,686,804 - MCAODC_13715 0.41 +0.4
2,686,804 - MCAODC_13715 0.41 -0.5
2,686,835 - MCAODC_13715 0.45 +0.7
2,686,872 + MCAODC_13715 0.51 +0.0
2,686,922 + MCAODC_13715 0.58 -1.0
2,687,010 + MCAODC_13715 0.72 +0.5
2,687,010 + MCAODC_13715 0.72 -0.5
2,687,010 + MCAODC_13715 0.72 +0.5
2,687,011 - MCAODC_13715 0.72 -0.3
2,687,011 - MCAODC_13715 0.72 -1.6
2,687,011 - MCAODC_13715 0.72 -1.2
2,687,011 - MCAODC_13715 0.72 +0.3
2,687,011 - MCAODC_13715 0.72 +1.1
2,687,012 + MCAODC_13715 0.72 +0.8
2,687,012 + MCAODC_13715 0.72 -0.8
2,687,012 + MCAODC_13715 0.72 +0.6
2,687,012 + MCAODC_13715 0.72 +0.5
2,687,013 - MCAODC_13715 0.72 +1.5
2,687,052 + MCAODC_13715 0.78 -1.1
2,687,053 - MCAODC_13715 0.78 -1.5
2,687,053 - MCAODC_13715 0.78 +1.3
2,687,099 + MCAODC_13715 0.85 -0.1
2,687,099 + MCAODC_13715 0.85 -0.8
2,687,099 + MCAODC_13715 0.85 -0.2
2,687,155 + +0.6
2,687,200 + -0.3
2,687,848 + accD MCAODC_13720 0.54 -2.3
2,688,305 + -0.0

Or see this region's nucleotide sequence