Strain Fitness in Escherichia coli ECRC101 around MCAODC_13685

Experiment: Control_ECRC101_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmnmC and fabB are separated by 158 nucleotidesfabB and yfcJ are separated by 274 nucleotides MCAODC_13680: mnmC - bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC, at 2,677,497 to 2,679,503 mnmC MCAODC_13685: fabB - beta-ketoacyl-ACP synthase I, at 2,679,662 to 2,680,882 fabB MCAODC_13690: yfcJ - Uncharacterized MFS-type transporter YfcJ, at 2,681,157 to 2,682,335 yfcJ Position (kb) 2679 2680 2681Strain fitness (log2 ratio) -2 -1 0 1 2at 2678.703 kb on + strand, within mnmCat 2678.727 kb on - strand, within mnmCat 2678.760 kb on + strand, within mnmCat 2678.761 kb on - strand, within mnmCat 2678.761 kb on - strand, within mnmCat 2678.814 kb on - strand, within mnmCat 2678.873 kb on + strand, within mnmCat 2678.873 kb on + strand, within mnmCat 2678.873 kb on + strand, within mnmCat 2678.874 kb on - strand, within mnmCat 2678.874 kb on - strand, within mnmCat 2678.989 kb on - strand, within mnmCat 2679.032 kb on + strand, within mnmCat 2679.033 kb on - strand, within mnmCat 2679.035 kb on + strand, within mnmCat 2679.035 kb on + strand, within mnmCat 2679.049 kb on - strand, within mnmCat 2679.219 kb on + strand, within mnmCat 2679.361 kb on - strandat 2679.385 kb on + strandat 2679.386 kb on - strandat 2679.452 kb on + strandat 2679.453 kb on - strandat 2679.464 kb on + strandat 2679.486 kb on + strandat 2679.486 kb on + strandat 2679.487 kb on - strandat 2679.487 kb on - strandat 2679.493 kb on + strandat 2679.505 kb on + strandat 2679.510 kb on + strandat 2679.511 kb on - strandat 2679.520 kb on - strandat 2679.528 kb on + strandat 2679.551 kb on + strandat 2679.574 kb on + strandat 2679.575 kb on - strandat 2679.632 kb on + strandat 2680.292 kb on + strand, within fabBat 2680.292 kb on + strand, within fabBat 2680.292 kb on + strand, within fabBat 2681.064 kb on + strandat 2681.065 kb on - strandat 2681.091 kb on + strandat 2681.091 kb on + strandat 2681.091 kb on + strandat 2681.092 kb on - strandat 2681.151 kb on + strandat 2681.238 kb on + strandat 2681.239 kb on - strandat 2681.249 kb on - strandat 2681.249 kb on - strandat 2681.307 kb on - strand, within yfcJat 2681.307 kb on - strand, within yfcJat 2681.389 kb on - strand, within yfcJat 2681.423 kb on - strand, within yfcJat 2681.423 kb on - strand, within yfcJat 2681.423 kb on - strand, within yfcJat 2681.423 kb on - strand, within yfcJat 2681.423 kb on - strand, within yfcJat 2681.542 kb on + strand, within yfcJat 2681.543 kb on - strand, within yfcJat 2681.570 kb on - strand, within yfcJat 2681.628 kb on + strand, within yfcJat 2681.672 kb on + strand, within yfcJat 2681.673 kb on - strand, within yfcJat 2681.722 kb on + strand, within yfcJat 2681.722 kb on + strand, within yfcJat 2681.808 kb on - strand, within yfcJat 2681.825 kb on - strand, within yfcJat 2681.825 kb on - strand, within yfcJat 2681.837 kb on - strand, within yfcJat 2681.837 kb on - strand, within yfcJat 2681.837 kb on - strand, within yfcJat 2681.881 kb on - strand, within yfcJat 2681.881 kb on - strand, within yfcJ

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101_WM
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2,678,703 + mnmC MCAODC_13680 0.60 -0.1
2,678,727 - mnmC MCAODC_13680 0.61 -0.3
2,678,760 + mnmC MCAODC_13680 0.63 +0.3
2,678,761 - mnmC MCAODC_13680 0.63 -1.3
2,678,761 - mnmC MCAODC_13680 0.63 -0.7
2,678,814 - mnmC MCAODC_13680 0.66 -0.1
2,678,873 + mnmC MCAODC_13680 0.69 +0.5
2,678,873 + mnmC MCAODC_13680 0.69 +1.4
2,678,873 + mnmC MCAODC_13680 0.69 +0.5
2,678,874 - mnmC MCAODC_13680 0.69 -0.4
2,678,874 - mnmC MCAODC_13680 0.69 -1.8
2,678,989 - mnmC MCAODC_13680 0.74 -0.2
2,679,032 + mnmC MCAODC_13680 0.76 +1.2
2,679,033 - mnmC MCAODC_13680 0.77 +1.1
2,679,035 + mnmC MCAODC_13680 0.77 +0.6
2,679,035 + mnmC MCAODC_13680 0.77 +0.8
2,679,049 - mnmC MCAODC_13680 0.77 -0.2
2,679,219 + mnmC MCAODC_13680 0.86 -0.3
2,679,361 - +0.3
2,679,385 + +0.5
2,679,386 - -0.6
2,679,452 + +0.2
2,679,453 - -0.3
2,679,464 + -1.8
2,679,486 + +0.3
2,679,486 + -1.2
2,679,487 - -0.4
2,679,487 - -1.4
2,679,493 + +0.5
2,679,505 + +0.6
2,679,510 + +0.3
2,679,511 - +0.0
2,679,520 - -2.5
2,679,528 + +0.3
2,679,551 + -0.6
2,679,574 + +1.8
2,679,575 - -0.1
2,679,632 + +0.3
2,680,292 + fabB MCAODC_13685 0.52 -0.7
2,680,292 + fabB MCAODC_13685 0.52 -0.1
2,680,292 + fabB MCAODC_13685 0.52 -1.6
2,681,064 + -0.6
2,681,065 - -0.2
2,681,091 + +0.6
2,681,091 + -0.4
2,681,091 + -1.7
2,681,092 - -0.7
2,681,151 + -2.0
2,681,238 + +0.6
2,681,239 - +0.5
2,681,249 - +0.5
2,681,249 - +0.4
2,681,307 - yfcJ MCAODC_13690 0.13 -1.6
2,681,307 - yfcJ MCAODC_13690 0.13 +0.7
2,681,389 - yfcJ MCAODC_13690 0.20 +0.4
2,681,423 - yfcJ MCAODC_13690 0.23 +0.4
2,681,423 - yfcJ MCAODC_13690 0.23 -0.3
2,681,423 - yfcJ MCAODC_13690 0.23 +0.0
2,681,423 - yfcJ MCAODC_13690 0.23 -1.7
2,681,423 - yfcJ MCAODC_13690 0.23 -0.0
2,681,542 + yfcJ MCAODC_13690 0.33 +0.3
2,681,543 - yfcJ MCAODC_13690 0.33 +0.5
2,681,570 - yfcJ MCAODC_13690 0.35 +0.2
2,681,628 + yfcJ MCAODC_13690 0.40 +0.2
2,681,672 + yfcJ MCAODC_13690 0.44 +0.4
2,681,673 - yfcJ MCAODC_13690 0.44 +0.2
2,681,722 + yfcJ MCAODC_13690 0.48 -0.5
2,681,722 + yfcJ MCAODC_13690 0.48 +0.5
2,681,808 - yfcJ MCAODC_13690 0.55 +0.4
2,681,825 - yfcJ MCAODC_13690 0.57 -0.1
2,681,825 - yfcJ MCAODC_13690 0.57 -0.3
2,681,837 - yfcJ MCAODC_13690 0.58 +1.1
2,681,837 - yfcJ MCAODC_13690 0.58 -0.6
2,681,837 - yfcJ MCAODC_13690 0.58 +1.2
2,681,881 - yfcJ MCAODC_13690 0.61 -1.1
2,681,881 - yfcJ MCAODC_13690 0.61 -0.2

Or see this region's nucleotide sequence