Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mnmC and fabB are separated by 158 nucleotides fabB and yfcJ are separated by 274 nucleotides
MCAODC_13680: mnmC - bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC, at 2,677,497 to 2,679,503
mnmC
MCAODC_13685: fabB - beta-ketoacyl-ACP synthase I, at 2,679,662 to 2,680,882
fabB
MCAODC_13690: yfcJ - Uncharacterized MFS-type transporter YfcJ, at 2,681,157 to 2,682,335
yfcJ
Position (kb)
2679
2680
2681 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2678.703 kb on + strand, within mnmC at 2678.727 kb on - strand, within mnmC at 2678.760 kb on + strand, within mnmC at 2678.761 kb on - strand, within mnmC at 2678.761 kb on - strand, within mnmC at 2678.814 kb on - strand, within mnmC at 2678.873 kb on + strand, within mnmC at 2678.873 kb on + strand, within mnmC at 2678.873 kb on + strand, within mnmC at 2678.874 kb on - strand, within mnmC at 2678.874 kb on - strand, within mnmC at 2678.989 kb on - strand, within mnmC at 2679.032 kb on + strand, within mnmC at 2679.033 kb on - strand, within mnmC at 2679.035 kb on + strand, within mnmC at 2679.035 kb on + strand, within mnmC at 2679.049 kb on - strand, within mnmC at 2679.219 kb on + strand, within mnmC at 2679.361 kb on - strand at 2679.385 kb on + strand at 2679.386 kb on - strand at 2679.452 kb on + strand at 2679.453 kb on - strand at 2679.464 kb on + strand at 2679.486 kb on + strand at 2679.486 kb on + strand at 2679.487 kb on - strand at 2679.487 kb on - strand at 2679.493 kb on + strand at 2679.505 kb on + strand at 2679.510 kb on + strand at 2679.511 kb on - strand at 2679.520 kb on - strand at 2679.528 kb on + strand at 2679.551 kb on + strand at 2679.574 kb on + strand at 2679.575 kb on - strand at 2679.632 kb on + strand at 2680.292 kb on + strand, within fabB at 2680.292 kb on + strand, within fabB at 2680.292 kb on + strand, within fabB at 2681.064 kb on + strand at 2681.065 kb on - strand at 2681.091 kb on + strand at 2681.091 kb on + strand at 2681.091 kb on + strand at 2681.092 kb on - strand at 2681.151 kb on + strand at 2681.238 kb on + strand at 2681.239 kb on - strand at 2681.249 kb on - strand at 2681.249 kb on - strand at 2681.307 kb on - strand, within yfcJ at 2681.307 kb on - strand, within yfcJ at 2681.389 kb on - strand, within yfcJ at 2681.423 kb on - strand, within yfcJ at 2681.423 kb on - strand, within yfcJ at 2681.423 kb on - strand, within yfcJ at 2681.423 kb on - strand, within yfcJ at 2681.423 kb on - strand, within yfcJ at 2681.542 kb on + strand, within yfcJ at 2681.543 kb on - strand, within yfcJ at 2681.570 kb on - strand, within yfcJ at 2681.628 kb on + strand, within yfcJ at 2681.672 kb on + strand, within yfcJ at 2681.673 kb on - strand, within yfcJ at 2681.722 kb on + strand, within yfcJ at 2681.722 kb on + strand, within yfcJ at 2681.808 kb on - strand, within yfcJ at 2681.825 kb on - strand, within yfcJ at 2681.825 kb on - strand, within yfcJ at 2681.837 kb on - strand, within yfcJ at 2681.837 kb on - strand, within yfcJ at 2681.837 kb on - strand, within yfcJ at 2681.881 kb on - strand, within yfcJ at 2681.881 kb on - strand, within yfcJ
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101_WM remove 2,678,703 + mnmC MCAODC_13680 0.60 -0.1 2,678,727 - mnmC MCAODC_13680 0.61 -0.3 2,678,760 + mnmC MCAODC_13680 0.63 +0.3 2,678,761 - mnmC MCAODC_13680 0.63 -1.3 2,678,761 - mnmC MCAODC_13680 0.63 -0.7 2,678,814 - mnmC MCAODC_13680 0.66 -0.1 2,678,873 + mnmC MCAODC_13680 0.69 +0.5 2,678,873 + mnmC MCAODC_13680 0.69 +1.4 2,678,873 + mnmC MCAODC_13680 0.69 +0.5 2,678,874 - mnmC MCAODC_13680 0.69 -0.4 2,678,874 - mnmC MCAODC_13680 0.69 -1.8 2,678,989 - mnmC MCAODC_13680 0.74 -0.2 2,679,032 + mnmC MCAODC_13680 0.76 +1.2 2,679,033 - mnmC MCAODC_13680 0.77 +1.1 2,679,035 + mnmC MCAODC_13680 0.77 +0.6 2,679,035 + mnmC MCAODC_13680 0.77 +0.8 2,679,049 - mnmC MCAODC_13680 0.77 -0.2 2,679,219 + mnmC MCAODC_13680 0.86 -0.3 2,679,361 - +0.3 2,679,385 + +0.5 2,679,386 - -0.6 2,679,452 + +0.2 2,679,453 - -0.3 2,679,464 + -1.8 2,679,486 + +0.3 2,679,486 + -1.2 2,679,487 - -0.4 2,679,487 - -1.4 2,679,493 + +0.5 2,679,505 + +0.6 2,679,510 + +0.3 2,679,511 - +0.0 2,679,520 - -2.5 2,679,528 + +0.3 2,679,551 + -0.6 2,679,574 + +1.8 2,679,575 - -0.1 2,679,632 + +0.3 2,680,292 + fabB MCAODC_13685 0.52 -0.7 2,680,292 + fabB MCAODC_13685 0.52 -0.1 2,680,292 + fabB MCAODC_13685 0.52 -1.6 2,681,064 + -0.6 2,681,065 - -0.2 2,681,091 + +0.6 2,681,091 + -0.4 2,681,091 + -1.7 2,681,092 - -0.7 2,681,151 + -2.0 2,681,238 + +0.6 2,681,239 - +0.5 2,681,249 - +0.5 2,681,249 - +0.4 2,681,307 - yfcJ MCAODC_13690 0.13 -1.6 2,681,307 - yfcJ MCAODC_13690 0.13 +0.7 2,681,389 - yfcJ MCAODC_13690 0.20 +0.4 2,681,423 - yfcJ MCAODC_13690 0.23 +0.4 2,681,423 - yfcJ MCAODC_13690 0.23 -0.3 2,681,423 - yfcJ MCAODC_13690 0.23 +0.0 2,681,423 - yfcJ MCAODC_13690 0.23 -1.7 2,681,423 - yfcJ MCAODC_13690 0.23 -0.0 2,681,542 + yfcJ MCAODC_13690 0.33 +0.3 2,681,543 - yfcJ MCAODC_13690 0.33 +0.5 2,681,570 - yfcJ MCAODC_13690 0.35 +0.2 2,681,628 + yfcJ MCAODC_13690 0.40 +0.2 2,681,672 + yfcJ MCAODC_13690 0.44 +0.4 2,681,673 - yfcJ MCAODC_13690 0.44 +0.2 2,681,722 + yfcJ MCAODC_13690 0.48 -0.5 2,681,722 + yfcJ MCAODC_13690 0.48 +0.5 2,681,808 - yfcJ MCAODC_13690 0.55 +0.4 2,681,825 - yfcJ MCAODC_13690 0.57 -0.1 2,681,825 - yfcJ MCAODC_13690 0.57 -0.3 2,681,837 - yfcJ MCAODC_13690 0.58 +1.1 2,681,837 - yfcJ MCAODC_13690 0.58 -0.6 2,681,837 - yfcJ MCAODC_13690 0.58 +1.2 2,681,881 - yfcJ MCAODC_13690 0.61 -1.1 2,681,881 - yfcJ MCAODC_13690 0.61 -0.2
Or see this region's nucleotide sequence