Strain Fitness in Escherichia coli ECRC101 around MCAODC_11505

Experiment: Control_ECRC101_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_11495 and MCAODC_11500 are separated by 0 nucleotidesMCAODC_11500 and MCAODC_11505 are separated by 97 nucleotidesMCAODC_11505 and MCAODC_11510 are separated by 395 nucleotides MCAODC_11495: MCAODC_11495 - DNA-binding protein, at 2,289,058 to 2,290,689 _11495 MCAODC_11500: MCAODC_11500 - hypothetical protein, at 2,290,690 to 2,291,088 _11500 MCAODC_11505: MCAODC_11505 - hypothetical protein, at 2,291,186 to 2,291,599 _11505 MCAODC_11510: MCAODC_11510 - Procyclic acidic repetitive protein (PARP), at 2,291,995 to 2,293,245 _11510 Position (kb) 2291 2292Strain fitness (log2 ratio) -1 0 1at 2290.487 kb on + strand, within MCAODC_11495at 2290.487 kb on + strand, within MCAODC_11495at 2290.488 kb on - strand, within MCAODC_11495at 2290.753 kb on - strand, within MCAODC_11500at 2290.896 kb on - strand, within MCAODC_11500at 2290.899 kb on - strand, within MCAODC_11500at 2291.058 kb on + strandat 2291.080 kb on + strandat 2291.204 kb on - strandat 2291.401 kb on + strand, within MCAODC_11505at 2291.446 kb on + strand, within MCAODC_11505at 2291.458 kb on - strand, within MCAODC_11505at 2291.718 kb on + strandat 2291.734 kb on - strandat 2292.012 kb on + strandat 2292.447 kb on - strand, within MCAODC_11510

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101_WM
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2,290,487 + MCAODC_11495 0.88 -0.5
2,290,487 + MCAODC_11495 0.88 +0.6
2,290,488 - MCAODC_11495 0.88 -1.3
2,290,753 - MCAODC_11500 0.16 +1.2
2,290,896 - MCAODC_11500 0.52 -1.6
2,290,899 - MCAODC_11500 0.52 -1.2
2,291,058 + -0.9
2,291,080 + +1.1
2,291,204 - -0.4
2,291,401 + MCAODC_11505 0.52 +1.4
2,291,446 + MCAODC_11505 0.63 -1.7
2,291,458 - MCAODC_11505 0.66 -1.1
2,291,718 + -0.4
2,291,734 - -0.3
2,292,012 + +1.1
2,292,447 - MCAODC_11510 0.36 -0.4

Or see this region's nucleotide sequence