Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_11495 and MCAODC_11500 are separated by 0 nucleotides MCAODC_11500 and MCAODC_11505 are separated by 97 nucleotides MCAODC_11505 and MCAODC_11510 are separated by 395 nucleotides
MCAODC_11495: MCAODC_11495 - DNA-binding protein, at 2,289,058 to 2,290,689
_11495
MCAODC_11500: MCAODC_11500 - hypothetical protein, at 2,290,690 to 2,291,088
_11500
MCAODC_11505: MCAODC_11505 - hypothetical protein, at 2,291,186 to 2,291,599
_11505
MCAODC_11510: MCAODC_11510 - Procyclic acidic repetitive protein (PARP), at 2,291,995 to 2,293,245
_11510
Position (kb)
2291
2292 Strain fitness (log2 ratio)
-1
0
1 at 2290.487 kb on + strand, within MCAODC_11495 at 2290.487 kb on + strand, within MCAODC_11495 at 2290.488 kb on - strand, within MCAODC_11495 at 2290.753 kb on - strand, within MCAODC_11500 at 2290.896 kb on - strand, within MCAODC_11500 at 2290.899 kb on - strand, within MCAODC_11500 at 2291.058 kb on + strand at 2291.080 kb on + strand at 2291.204 kb on - strand at 2291.401 kb on + strand, within MCAODC_11505 at 2291.446 kb on + strand, within MCAODC_11505 at 2291.458 kb on - strand, within MCAODC_11505 at 2291.718 kb on + strand at 2291.734 kb on - strand at 2292.012 kb on + strand at 2292.447 kb on - strand, within MCAODC_11510
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101_WM remove 2,290,487 + MCAODC_11495 0.88 -0.5 2,290,487 + MCAODC_11495 0.88 +0.6 2,290,488 - MCAODC_11495 0.88 -1.3 2,290,753 - MCAODC_11500 0.16 +1.2 2,290,896 - MCAODC_11500 0.52 -1.6 2,290,899 - MCAODC_11500 0.52 -1.2 2,291,058 + -0.9 2,291,080 + +1.1 2,291,204 - -0.4 2,291,401 + MCAODC_11505 0.52 +1.4 2,291,446 + MCAODC_11505 0.63 -1.7 2,291,458 - MCAODC_11505 0.66 -1.1 2,291,718 + -0.4 2,291,734 - -0.3 2,292,012 + +1.1 2,292,447 - MCAODC_11510 0.36 -0.4
Or see this region's nucleotide sequence