Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cysJ and cysI overlap by 1 nucleotides cysI and cysH are separated by 73 nucleotides
MCAODC_10895: cysJ - NADPH-dependent assimilatory sulfite reductase flavoprotein subunit, at 2,172,781 to 2,174,580
cysJ
MCAODC_10900: cysI - assimilatory sulfite reductase (NADPH) hemoprotein subunit, at 2,174,580 to 2,176,292
cysI
MCAODC_10905: cysH - phosphoadenosine phosphosulfate reductase, at 2,176,366 to 2,177,100
cysH
Position (kb)
2174
2175
2176
2177 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2173.774 kb on + strand, within cysJ at 2173.774 kb on + strand, within cysJ at 2173.775 kb on - strand, within cysJ at 2173.775 kb on - strand, within cysJ at 2173.775 kb on - strand, within cysJ at 2173.786 kb on - strand, within cysJ at 2173.832 kb on + strand, within cysJ at 2173.840 kb on + strand, within cysJ at 2173.840 kb on + strand, within cysJ at 2173.840 kb on + strand, within cysJ at 2173.841 kb on - strand, within cysJ at 2173.851 kb on + strand, within cysJ at 2173.942 kb on + strand, within cysJ at 2173.983 kb on - strand, within cysJ at 2174.103 kb on + strand, within cysJ at 2174.103 kb on + strand, within cysJ at 2174.104 kb on - strand, within cysJ at 2174.148 kb on + strand, within cysJ at 2174.149 kb on - strand, within cysJ at 2174.190 kb on + strand, within cysJ at 2174.257 kb on - strand, within cysJ at 2174.273 kb on - strand, within cysJ at 2174.294 kb on - strand, within cysJ at 2174.294 kb on - strand, within cysJ at 2174.360 kb on - strand, within cysJ at 2174.363 kb on + strand, within cysJ at 2174.363 kb on + strand, within cysJ at 2174.363 kb on + strand, within cysJ at 2174.428 kb on + strand at 2174.428 kb on + strand at 2174.428 kb on + strand at 2174.428 kb on + strand at 2174.429 kb on - strand at 2174.429 kb on - strand at 2174.429 kb on - strand at 2174.429 kb on - strand at 2174.429 kb on - strand at 2174.445 kb on + strand at 2174.549 kb on + strand at 2174.575 kb on + strand at 2174.576 kb on - strand at 2174.578 kb on + strand at 2174.687 kb on - strand at 2174.721 kb on - strand at 2174.751 kb on + strand at 2174.751 kb on + strand at 2174.751 kb on + strand at 2174.751 kb on - strand at 2174.752 kb on - strand, within cysI at 2174.904 kb on + strand, within cysI at 2174.904 kb on + strand, within cysI at 2174.905 kb on - strand, within cysI at 2174.905 kb on - strand, within cysI at 2174.905 kb on - strand, within cysI at 2175.039 kb on - strand, within cysI at 2175.043 kb on + strand, within cysI at 2175.044 kb on - strand, within cysI at 2175.064 kb on - strand, within cysI at 2175.064 kb on - strand, within cysI at 2175.090 kb on + strand, within cysI at 2175.090 kb on + strand, within cysI at 2175.090 kb on + strand, within cysI at 2175.142 kb on - strand, within cysI at 2175.378 kb on + strand, within cysI at 2175.422 kb on + strand, within cysI at 2175.423 kb on - strand, within cysI at 2175.423 kb on - strand, within cysI at 2175.423 kb on - strand, within cysI at 2175.504 kb on + strand, within cysI at 2175.588 kb on + strand, within cysI at 2175.614 kb on + strand, within cysI at 2175.614 kb on + strand, within cysI at 2175.641 kb on + strand, within cysI at 2175.642 kb on - strand, within cysI at 2175.756 kb on - strand, within cysI at 2175.839 kb on - strand, within cysI at 2175.941 kb on + strand, within cysI at 2175.961 kb on + strand, within cysI at 2176.006 kb on + strand, within cysI at 2176.007 kb on - strand, within cysI at 2176.081 kb on - strand, within cysI at 2176.118 kb on + strand, within cysI at 2176.131 kb on + strand at 2176.132 kb on - strand at 2176.291 kb on - strand at 2176.319 kb on + strand at 2176.320 kb on - strand at 2176.365 kb on + strand at 2176.366 kb on - strand at 2176.366 kb on - strand at 2176.382 kb on + strand at 2176.383 kb on - strand at 2176.409 kb on + strand at 2176.410 kb on - strand at 2176.476 kb on - strand, within cysH at 2176.507 kb on + strand, within cysH at 2176.507 kb on + strand, within cysH at 2176.507 kb on + strand, within cysH at 2176.507 kb on + strand, within cysH at 2176.508 kb on - strand, within cysH at 2176.512 kb on - strand, within cysH at 2176.578 kb on + strand, within cysH at 2176.632 kb on + strand, within cysH at 2176.675 kb on + strand, within cysH at 2176.756 kb on - strand, within cysH at 2176.892 kb on + strand, within cysH at 2176.896 kb on + strand, within cysH at 2176.897 kb on - strand, within cysH at 2176.897 kb on - strand, within cysH at 2176.935 kb on - strand, within cysH at 2176.942 kb on + strand, within cysH at 2176.967 kb on - strand, within cysH at 2177.013 kb on + strand, within cysH at 2177.117 kb on + strand at 2177.203 kb on - strand at 2177.211 kb on + strand at 2177.211 kb on + strand at 2177.211 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101_WM remove 2,173,774 + cysJ MCAODC_10895 0.55 -2.4 2,173,774 + cysJ MCAODC_10895 0.55 -2.5 2,173,775 - cysJ MCAODC_10895 0.55 -1.9 2,173,775 - cysJ MCAODC_10895 0.55 -0.9 2,173,775 - cysJ MCAODC_10895 0.55 -2.6 2,173,786 - cysJ MCAODC_10895 0.56 -4.4 2,173,832 + cysJ MCAODC_10895 0.58 -4.4 2,173,840 + cysJ MCAODC_10895 0.59 -2.2 2,173,840 + cysJ MCAODC_10895 0.59 -1.2 2,173,840 + cysJ MCAODC_10895 0.59 -0.5 2,173,841 - cysJ MCAODC_10895 0.59 -2.4 2,173,851 + cysJ MCAODC_10895 0.59 -1.4 2,173,942 + cysJ MCAODC_10895 0.65 -2.0 2,173,983 - cysJ MCAODC_10895 0.67 -2.4 2,174,103 + cysJ MCAODC_10895 0.73 -1.0 2,174,103 + cysJ MCAODC_10895 0.73 -1.7 2,174,104 - cysJ MCAODC_10895 0.73 -2.0 2,174,148 + cysJ MCAODC_10895 0.76 -0.8 2,174,149 - cysJ MCAODC_10895 0.76 -3.6 2,174,190 + cysJ MCAODC_10895 0.78 -2.4 2,174,257 - cysJ MCAODC_10895 0.82 -2.2 2,174,273 - cysJ MCAODC_10895 0.83 -0.7 2,174,294 - cysJ MCAODC_10895 0.84 -2.5 2,174,294 - cysJ MCAODC_10895 0.84 -2.8 2,174,360 - cysJ MCAODC_10895 0.88 -1.3 2,174,363 + cysJ MCAODC_10895 0.88 -0.8 2,174,363 + cysJ MCAODC_10895 0.88 -2.3 2,174,363 + cysJ MCAODC_10895 0.88 -1.9 2,174,428 + -2.0 2,174,428 + -3.5 2,174,428 + -2.0 2,174,428 + -1.3 2,174,429 - -2.7 2,174,429 - -1.3 2,174,429 - -1.1 2,174,429 - -0.5 2,174,429 - -2.2 2,174,445 + -0.4 2,174,549 + -2.4 2,174,575 + -2.1 2,174,576 - -2.6 2,174,578 + -1.3 2,174,687 - -3.4 2,174,721 - -1.5 2,174,751 + -2.0 2,174,751 + -2.4 2,174,751 + -0.8 2,174,751 - +0.6 2,174,752 - cysI MCAODC_10900 0.10 -2.8 2,174,904 + cysI MCAODC_10900 0.19 -3.5 2,174,904 + cysI MCAODC_10900 0.19 -1.5 2,174,905 - cysI MCAODC_10900 0.19 -1.9 2,174,905 - cysI MCAODC_10900 0.19 -3.2 2,174,905 - cysI MCAODC_10900 0.19 -1.5 2,175,039 - cysI MCAODC_10900 0.27 -3.7 2,175,043 + cysI MCAODC_10900 0.27 -2.2 2,175,044 - cysI MCAODC_10900 0.27 -2.4 2,175,064 - cysI MCAODC_10900 0.28 -1.5 2,175,064 - cysI MCAODC_10900 0.28 -0.8 2,175,090 + cysI MCAODC_10900 0.30 -0.6 2,175,090 + cysI MCAODC_10900 0.30 +1.0 2,175,090 + cysI MCAODC_10900 0.30 -2.5 2,175,142 - cysI MCAODC_10900 0.33 -1.8 2,175,378 + cysI MCAODC_10900 0.47 +0.2 2,175,422 + cysI MCAODC_10900 0.49 -4.2 2,175,423 - cysI MCAODC_10900 0.49 -2.4 2,175,423 - cysI MCAODC_10900 0.49 -3.5 2,175,423 - cysI MCAODC_10900 0.49 -3.3 2,175,504 + cysI MCAODC_10900 0.54 -1.4 2,175,588 + cysI MCAODC_10900 0.59 -3.5 2,175,614 + cysI MCAODC_10900 0.60 -2.1 2,175,614 + cysI MCAODC_10900 0.60 -2.1 2,175,641 + cysI MCAODC_10900 0.62 -0.6 2,175,642 - cysI MCAODC_10900 0.62 -2.8 2,175,756 - cysI MCAODC_10900 0.69 +0.5 2,175,839 - cysI MCAODC_10900 0.73 -2.4 2,175,941 + cysI MCAODC_10900 0.79 -2.5 2,175,961 + cysI MCAODC_10900 0.81 -1.8 2,176,006 + cysI MCAODC_10900 0.83 -2.6 2,176,007 - cysI MCAODC_10900 0.83 -0.9 2,176,081 - cysI MCAODC_10900 0.88 -2.3 2,176,118 + cysI MCAODC_10900 0.90 -2.4 2,176,131 + -3.2 2,176,132 - -0.3 2,176,291 - -1.2 2,176,319 + -1.8 2,176,320 - -2.4 2,176,365 + -2.2 2,176,366 - -4.2 2,176,366 - -2.2 2,176,382 + -3.3 2,176,383 - -1.9 2,176,409 + -3.0 2,176,410 - -3.3 2,176,476 - cysH MCAODC_10905 0.15 -1.7 2,176,507 + cysH MCAODC_10905 0.19 -3.7 2,176,507 + cysH MCAODC_10905 0.19 -3.1 2,176,507 + cysH MCAODC_10905 0.19 -0.8 2,176,507 + cysH MCAODC_10905 0.19 -3.1 2,176,508 - cysH MCAODC_10905 0.19 -2.8 2,176,512 - cysH MCAODC_10905 0.20 -1.6 2,176,578 + cysH MCAODC_10905 0.29 -1.8 2,176,632 + cysH MCAODC_10905 0.36 -2.1 2,176,675 + cysH MCAODC_10905 0.42 -4.1 2,176,756 - cysH MCAODC_10905 0.53 -3.6 2,176,892 + cysH MCAODC_10905 0.72 -3.1 2,176,896 + cysH MCAODC_10905 0.72 -0.9 2,176,897 - cysH MCAODC_10905 0.72 -1.4 2,176,897 - cysH MCAODC_10905 0.72 -2.4 2,176,935 - cysH MCAODC_10905 0.77 -3.8 2,176,942 + cysH MCAODC_10905 0.78 -5.2 2,176,967 - cysH MCAODC_10905 0.82 -2.6 2,177,013 + cysH MCAODC_10905 0.88 -2.0 2,177,117 + +1.7 2,177,203 - +1.2 2,177,211 + -0.7 2,177,211 + -0.6 2,177,211 + +1.3
Or see this region's nucleotide sequence