Strain Fitness in Escherichia coli ECRC101 around MCAODC_10900

Experiment: Control_ECRC101_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcysJ and cysI overlap by 1 nucleotidescysI and cysH are separated by 73 nucleotides MCAODC_10895: cysJ - NADPH-dependent assimilatory sulfite reductase flavoprotein subunit, at 2,172,781 to 2,174,580 cysJ MCAODC_10900: cysI - assimilatory sulfite reductase (NADPH) hemoprotein subunit, at 2,174,580 to 2,176,292 cysI MCAODC_10905: cysH - phosphoadenosine phosphosulfate reductase, at 2,176,366 to 2,177,100 cysH Position (kb) 2174 2175 2176 2177Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2173.774 kb on + strand, within cysJat 2173.774 kb on + strand, within cysJat 2173.775 kb on - strand, within cysJat 2173.775 kb on - strand, within cysJat 2173.775 kb on - strand, within cysJat 2173.786 kb on - strand, within cysJat 2173.832 kb on + strand, within cysJat 2173.840 kb on + strand, within cysJat 2173.840 kb on + strand, within cysJat 2173.840 kb on + strand, within cysJat 2173.841 kb on - strand, within cysJat 2173.851 kb on + strand, within cysJat 2173.942 kb on + strand, within cysJat 2173.983 kb on - strand, within cysJat 2174.103 kb on + strand, within cysJat 2174.103 kb on + strand, within cysJat 2174.104 kb on - strand, within cysJat 2174.148 kb on + strand, within cysJat 2174.149 kb on - strand, within cysJat 2174.190 kb on + strand, within cysJat 2174.257 kb on - strand, within cysJat 2174.273 kb on - strand, within cysJat 2174.294 kb on - strand, within cysJat 2174.294 kb on - strand, within cysJat 2174.360 kb on - strand, within cysJat 2174.363 kb on + strand, within cysJat 2174.363 kb on + strand, within cysJat 2174.363 kb on + strand, within cysJat 2174.428 kb on + strandat 2174.428 kb on + strandat 2174.428 kb on + strandat 2174.428 kb on + strandat 2174.429 kb on - strandat 2174.429 kb on - strandat 2174.429 kb on - strandat 2174.429 kb on - strandat 2174.429 kb on - strandat 2174.445 kb on + strandat 2174.549 kb on + strandat 2174.575 kb on + strandat 2174.576 kb on - strandat 2174.578 kb on + strandat 2174.687 kb on - strandat 2174.721 kb on - strandat 2174.751 kb on + strandat 2174.751 kb on + strandat 2174.751 kb on + strandat 2174.751 kb on - strandat 2174.752 kb on - strand, within cysIat 2174.904 kb on + strand, within cysIat 2174.904 kb on + strand, within cysIat 2174.905 kb on - strand, within cysIat 2174.905 kb on - strand, within cysIat 2174.905 kb on - strand, within cysIat 2175.039 kb on - strand, within cysIat 2175.043 kb on + strand, within cysIat 2175.044 kb on - strand, within cysIat 2175.064 kb on - strand, within cysIat 2175.064 kb on - strand, within cysIat 2175.090 kb on + strand, within cysIat 2175.090 kb on + strand, within cysIat 2175.090 kb on + strand, within cysIat 2175.142 kb on - strand, within cysIat 2175.378 kb on + strand, within cysIat 2175.422 kb on + strand, within cysIat 2175.423 kb on - strand, within cysIat 2175.423 kb on - strand, within cysIat 2175.423 kb on - strand, within cysIat 2175.504 kb on + strand, within cysIat 2175.588 kb on + strand, within cysIat 2175.614 kb on + strand, within cysIat 2175.614 kb on + strand, within cysIat 2175.641 kb on + strand, within cysIat 2175.642 kb on - strand, within cysIat 2175.756 kb on - strand, within cysIat 2175.839 kb on - strand, within cysIat 2175.941 kb on + strand, within cysIat 2175.961 kb on + strand, within cysIat 2176.006 kb on + strand, within cysIat 2176.007 kb on - strand, within cysIat 2176.081 kb on - strand, within cysIat 2176.118 kb on + strand, within cysIat 2176.131 kb on + strandat 2176.132 kb on - strandat 2176.291 kb on - strandat 2176.319 kb on + strandat 2176.320 kb on - strandat 2176.365 kb on + strandat 2176.366 kb on - strandat 2176.366 kb on - strandat 2176.382 kb on + strandat 2176.383 kb on - strandat 2176.409 kb on + strandat 2176.410 kb on - strandat 2176.476 kb on - strand, within cysHat 2176.507 kb on + strand, within cysHat 2176.507 kb on + strand, within cysHat 2176.507 kb on + strand, within cysHat 2176.507 kb on + strand, within cysHat 2176.508 kb on - strand, within cysHat 2176.512 kb on - strand, within cysHat 2176.578 kb on + strand, within cysHat 2176.632 kb on + strand, within cysHat 2176.675 kb on + strand, within cysHat 2176.756 kb on - strand, within cysHat 2176.892 kb on + strand, within cysHat 2176.896 kb on + strand, within cysHat 2176.897 kb on - strand, within cysHat 2176.897 kb on - strand, within cysHat 2176.935 kb on - strand, within cysHat 2176.942 kb on + strand, within cysHat 2176.967 kb on - strand, within cysHat 2177.013 kb on + strand, within cysHat 2177.117 kb on + strandat 2177.203 kb on - strandat 2177.211 kb on + strandat 2177.211 kb on + strandat 2177.211 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101_WM
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2,173,774 + cysJ MCAODC_10895 0.55 -2.4
2,173,774 + cysJ MCAODC_10895 0.55 -2.5
2,173,775 - cysJ MCAODC_10895 0.55 -1.9
2,173,775 - cysJ MCAODC_10895 0.55 -0.9
2,173,775 - cysJ MCAODC_10895 0.55 -2.6
2,173,786 - cysJ MCAODC_10895 0.56 -4.4
2,173,832 + cysJ MCAODC_10895 0.58 -4.4
2,173,840 + cysJ MCAODC_10895 0.59 -2.2
2,173,840 + cysJ MCAODC_10895 0.59 -1.2
2,173,840 + cysJ MCAODC_10895 0.59 -0.5
2,173,841 - cysJ MCAODC_10895 0.59 -2.4
2,173,851 + cysJ MCAODC_10895 0.59 -1.4
2,173,942 + cysJ MCAODC_10895 0.65 -2.0
2,173,983 - cysJ MCAODC_10895 0.67 -2.4
2,174,103 + cysJ MCAODC_10895 0.73 -1.0
2,174,103 + cysJ MCAODC_10895 0.73 -1.7
2,174,104 - cysJ MCAODC_10895 0.73 -2.0
2,174,148 + cysJ MCAODC_10895 0.76 -0.8
2,174,149 - cysJ MCAODC_10895 0.76 -3.6
2,174,190 + cysJ MCAODC_10895 0.78 -2.4
2,174,257 - cysJ MCAODC_10895 0.82 -2.2
2,174,273 - cysJ MCAODC_10895 0.83 -0.7
2,174,294 - cysJ MCAODC_10895 0.84 -2.5
2,174,294 - cysJ MCAODC_10895 0.84 -2.8
2,174,360 - cysJ MCAODC_10895 0.88 -1.3
2,174,363 + cysJ MCAODC_10895 0.88 -0.8
2,174,363 + cysJ MCAODC_10895 0.88 -2.3
2,174,363 + cysJ MCAODC_10895 0.88 -1.9
2,174,428 + -2.0
2,174,428 + -3.5
2,174,428 + -2.0
2,174,428 + -1.3
2,174,429 - -2.7
2,174,429 - -1.3
2,174,429 - -1.1
2,174,429 - -0.5
2,174,429 - -2.2
2,174,445 + -0.4
2,174,549 + -2.4
2,174,575 + -2.1
2,174,576 - -2.6
2,174,578 + -1.3
2,174,687 - -3.4
2,174,721 - -1.5
2,174,751 + -2.0
2,174,751 + -2.4
2,174,751 + -0.8
2,174,751 - +0.6
2,174,752 - cysI MCAODC_10900 0.10 -2.8
2,174,904 + cysI MCAODC_10900 0.19 -3.5
2,174,904 + cysI MCAODC_10900 0.19 -1.5
2,174,905 - cysI MCAODC_10900 0.19 -1.9
2,174,905 - cysI MCAODC_10900 0.19 -3.2
2,174,905 - cysI MCAODC_10900 0.19 -1.5
2,175,039 - cysI MCAODC_10900 0.27 -3.7
2,175,043 + cysI MCAODC_10900 0.27 -2.2
2,175,044 - cysI MCAODC_10900 0.27 -2.4
2,175,064 - cysI MCAODC_10900 0.28 -1.5
2,175,064 - cysI MCAODC_10900 0.28 -0.8
2,175,090 + cysI MCAODC_10900 0.30 -0.6
2,175,090 + cysI MCAODC_10900 0.30 +1.0
2,175,090 + cysI MCAODC_10900 0.30 -2.5
2,175,142 - cysI MCAODC_10900 0.33 -1.8
2,175,378 + cysI MCAODC_10900 0.47 +0.2
2,175,422 + cysI MCAODC_10900 0.49 -4.2
2,175,423 - cysI MCAODC_10900 0.49 -2.4
2,175,423 - cysI MCAODC_10900 0.49 -3.5
2,175,423 - cysI MCAODC_10900 0.49 -3.3
2,175,504 + cysI MCAODC_10900 0.54 -1.4
2,175,588 + cysI MCAODC_10900 0.59 -3.5
2,175,614 + cysI MCAODC_10900 0.60 -2.1
2,175,614 + cysI MCAODC_10900 0.60 -2.1
2,175,641 + cysI MCAODC_10900 0.62 -0.6
2,175,642 - cysI MCAODC_10900 0.62 -2.8
2,175,756 - cysI MCAODC_10900 0.69 +0.5
2,175,839 - cysI MCAODC_10900 0.73 -2.4
2,175,941 + cysI MCAODC_10900 0.79 -2.5
2,175,961 + cysI MCAODC_10900 0.81 -1.8
2,176,006 + cysI MCAODC_10900 0.83 -2.6
2,176,007 - cysI MCAODC_10900 0.83 -0.9
2,176,081 - cysI MCAODC_10900 0.88 -2.3
2,176,118 + cysI MCAODC_10900 0.90 -2.4
2,176,131 + -3.2
2,176,132 - -0.3
2,176,291 - -1.2
2,176,319 + -1.8
2,176,320 - -2.4
2,176,365 + -2.2
2,176,366 - -4.2
2,176,366 - -2.2
2,176,382 + -3.3
2,176,383 - -1.9
2,176,409 + -3.0
2,176,410 - -3.3
2,176,476 - cysH MCAODC_10905 0.15 -1.7
2,176,507 + cysH MCAODC_10905 0.19 -3.7
2,176,507 + cysH MCAODC_10905 0.19 -3.1
2,176,507 + cysH MCAODC_10905 0.19 -0.8
2,176,507 + cysH MCAODC_10905 0.19 -3.1
2,176,508 - cysH MCAODC_10905 0.19 -2.8
2,176,512 - cysH MCAODC_10905 0.20 -1.6
2,176,578 + cysH MCAODC_10905 0.29 -1.8
2,176,632 + cysH MCAODC_10905 0.36 -2.1
2,176,675 + cysH MCAODC_10905 0.42 -4.1
2,176,756 - cysH MCAODC_10905 0.53 -3.6
2,176,892 + cysH MCAODC_10905 0.72 -3.1
2,176,896 + cysH MCAODC_10905 0.72 -0.9
2,176,897 - cysH MCAODC_10905 0.72 -1.4
2,176,897 - cysH MCAODC_10905 0.72 -2.4
2,176,935 - cysH MCAODC_10905 0.77 -3.8
2,176,942 + cysH MCAODC_10905 0.78 -5.2
2,176,967 - cysH MCAODC_10905 0.82 -2.6
2,177,013 + cysH MCAODC_10905 0.88 -2.0
2,177,117 + +1.7
2,177,203 - +1.2
2,177,211 + -0.7
2,177,211 + -0.6
2,177,211 + +1.3

Or see this region's nucleotide sequence