Strain Fitness in Escherichia coli ECRC101 around MCAODC_10400

Experiment: Control_ECRC101_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntygeG and MCAODC_10400 are separated by 225 nucleotidesMCAODC_10400 and MCAODC_10405 are separated by 429 nucleotidesMCAODC_10405 and yqeL overlap by 25 nucleotides MCAODC_10395: ygeG - Uncharacterized protein YgeG, at 2,070,397 to 2,070,888 ygeG MCAODC_10400: MCAODC_10400 - Putative uncharacterized protein YgeF, at 2,071,114 to 2,071,605 _10400 MCAODC_10405: MCAODC_10405 - Uncharacterized protein YqeK, at 2,072,035 to 2,072,460 _10405 MCAODC_10410: yqeL - Uncharacterized protein YqeL, at 2,072,436 to 2,072,576 yqeL Position (kb) 2071 2072Strain fitness (log2 ratio) -3 -2 -1 0 1at 2070.173 kb on - strandat 2070.176 kb on + strandat 2070.176 kb on + strandat 2070.176 kb on + strandat 2070.331 kb on + strandat 2070.357 kb on + strandat 2070.399 kb on - strandat 2070.457 kb on - strand, within ygeGat 2070.582 kb on - strand, within ygeGat 2070.761 kb on - strand, within ygeGat 2071.322 kb on - strand, within MCAODC_10400at 2071.733 kb on - strandat 2071.736 kb on + strandat 2071.758 kb on - strandat 2071.831 kb on + strandat 2071.831 kb on + strandat 2071.855 kb on - strandat 2071.938 kb on - strandat 2072.074 kb on - strandat 2072.245 kb on + strand, within MCAODC_10405at 2072.304 kb on + strand, within MCAODC_10405at 2072.412 kb on + strand, within MCAODC_10405

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101_WM
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2,070,173 - -0.3
2,070,176 + +0.3
2,070,176 + +0.8
2,070,176 + -1.0
2,070,331 + -2.9
2,070,357 + -0.7
2,070,399 - +0.2
2,070,457 - ygeG MCAODC_10395 0.12 -0.1
2,070,582 - ygeG MCAODC_10395 0.38 +0.9
2,070,761 - ygeG MCAODC_10395 0.74 +0.9
2,071,322 - MCAODC_10400 0.42 -1.0
2,071,733 - +0.6
2,071,736 + +0.4
2,071,758 - -2.3
2,071,831 + +0.9
2,071,831 + -1.1
2,071,855 - +0.1
2,071,938 - -1.2
2,072,074 - -0.5
2,072,245 + MCAODC_10405 0.49 +1.6
2,072,304 + MCAODC_10405 0.63 -2.1
2,072,412 + MCAODC_10405 0.88 -0.3

Or see this region's nucleotide sequence