Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt panF and yhdT overlap by 11 nucleotides yhdT and accC are separated by 108 nucleotides
MCAODC_08215: panF - sodium/pantothenate symporter, at 1,642,177 to 1,643,628
panF
MCAODC_08220: yhdT - Uncharacterized membrane protein YhdT, at 1,643,618 to 1,643,860
yhdT
MCAODC_08225: accC - acetyl-CoA carboxylase biotin carboxylase subunit, at 1,643,969 to 1,645,318
accC
Position (kb) 1643
1644 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1642.644 kb on + strand, within panF at 1642.644 kb on + strand, within panF at 1642.644 kb on + strand, within panF at 1642.645 kb on - strand, within panF at 1642.645 kb on - strand, within panF at 1642.690 kb on + strand, within panF at 1642.690 kb on + strand, within panF at 1642.690 kb on + strand, within panF at 1642.750 kb on + strand, within panF at 1642.750 kb on + strand, within panF at 1642.750 kb on + strand, within panF at 1642.750 kb on + strand, within panF at 1642.751 kb on - strand, within panF at 1642.822 kb on + strand, within panF at 1642.823 kb on - strand, within panF at 1642.839 kb on + strand, within panF at 1642.842 kb on - strand, within panF at 1642.842 kb on - strand, within panF at 1642.848 kb on + strand, within panF at 1642.848 kb on + strand, within panF at 1642.849 kb on - strand, within panF at 1642.864 kb on - strand, within panF at 1642.864 kb on - strand, within panF at 1642.877 kb on - strand, within panF at 1642.877 kb on - strand, within panF at 1642.877 kb on - strand, within panF at 1642.877 kb on - strand, within panF at 1642.879 kb on - strand, within panF at 1642.897 kb on + strand, within panF at 1642.915 kb on - strand, within panF at 1642.915 kb on - strand, within panF at 1642.915 kb on - strand, within panF at 1642.988 kb on - strand, within panF at 1642.988 kb on - strand, within panF at 1642.999 kb on + strand, within panF at 1642.999 kb on + strand, within panF at 1642.999 kb on + strand, within panF at 1643.000 kb on - strand, within panF at 1643.017 kb on + strand, within panF at 1643.018 kb on - strand, within panF at 1643.018 kb on - strand, within panF at 1643.018 kb on - strand, within panF at 1643.112 kb on + strand, within panF at 1643.114 kb on + strand, within panF at 1643.114 kb on + strand, within panF at 1643.114 kb on + strand, within panF at 1643.114 kb on + strand, within panF at 1643.114 kb on + strand, within panF at 1643.114 kb on + strand, within panF at 1643.114 kb on + strand, within panF at 1643.115 kb on - strand, within panF at 1643.115 kb on - strand, within panF at 1643.115 kb on - strand, within panF at 1643.115 kb on - strand, within panF at 1643.115 kb on - strand, within panF at 1643.116 kb on + strand, within panF at 1643.116 kb on + strand, within panF at 1643.116 kb on + strand, within panF at 1643.117 kb on - strand, within panF at 1643.117 kb on - strand, within panF at 1643.130 kb on + strand, within panF at 1643.316 kb on - strand, within panF at 1643.352 kb on + strand, within panF at 1643.415 kb on - strand, within panF at 1643.420 kb on + strand, within panF at 1643.420 kb on + strand, within panF at 1643.442 kb on + strand, within panF at 1643.460 kb on + strand, within panF at 1643.460 kb on + strand, within panF at 1643.460 kb on + strand, within panF at 1643.460 kb on + strand, within panF at 1643.461 kb on - strand, within panF at 1643.461 kb on - strand, within panF at 1643.461 kb on - strand, within panF at 1643.462 kb on + strand, within panF at 1643.462 kb on + strand, within panF at 1643.462 kb on + strand, within panF at 1643.463 kb on - strand, within panF at 1643.463 kb on - strand, within panF at 1643.463 kb on - strand, within panF at 1643.463 kb on - strand, within panF at 1643.522 kb on + strand at 1643.523 kb on - strand at 1643.574 kb on + strand at 1643.594 kb on + strand at 1643.608 kb on + strand at 1643.609 kb on - strand at 1643.614 kb on + strand at 1643.614 kb on + strand at 1643.690 kb on - strand, within yhdT at 1643.833 kb on + strand, within yhdT at 1643.896 kb on + strand at 1643.896 kb on + strand at 1643.897 kb on - strand at 1643.897 kb on - strand at 1643.897 kb on - strand at 1643.901 kb on + strand at 1643.901 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101_WM remove 1,642,644 + panF MCAODC_08215 0.32 -0.6 1,642,644 + panF MCAODC_08215 0.32 +0.4 1,642,644 + panF MCAODC_08215 0.32 +0.5 1,642,645 - panF MCAODC_08215 0.32 -0.0 1,642,645 - panF MCAODC_08215 0.32 +1.1 1,642,690 + panF MCAODC_08215 0.35 +0.4 1,642,690 + panF MCAODC_08215 0.35 -1.0 1,642,690 + panF MCAODC_08215 0.35 -0.0 1,642,750 + panF MCAODC_08215 0.39 -1.3 1,642,750 + panF MCAODC_08215 0.39 -1.6 1,642,750 + panF MCAODC_08215 0.39 -2.7 1,642,750 + panF MCAODC_08215 0.39 +1.2 1,642,751 - panF MCAODC_08215 0.40 -1.9 1,642,822 + panF MCAODC_08215 0.44 +1.4 1,642,823 - panF MCAODC_08215 0.44 +0.2 1,642,839 + panF MCAODC_08215 0.46 +0.2 1,642,842 - panF MCAODC_08215 0.46 +1.1 1,642,842 - panF MCAODC_08215 0.46 -0.4 1,642,848 + panF MCAODC_08215 0.46 -0.6 1,642,848 + panF MCAODC_08215 0.46 -2.1 1,642,849 - panF MCAODC_08215 0.46 +0.6 1,642,864 - panF MCAODC_08215 0.47 +0.1 1,642,864 - panF MCAODC_08215 0.47 -0.2 1,642,877 - panF MCAODC_08215 0.48 -0.5 1,642,877 - panF MCAODC_08215 0.48 -0.1 1,642,877 - panF MCAODC_08215 0.48 +0.6 1,642,877 - panF MCAODC_08215 0.48 +0.2 1,642,879 - panF MCAODC_08215 0.48 +0.2 1,642,897 + panF MCAODC_08215 0.50 +0.9 1,642,915 - panF MCAODC_08215 0.51 +0.4 1,642,915 - panF MCAODC_08215 0.51 +0.7 1,642,915 - panF MCAODC_08215 0.51 +0.7 1,642,988 - panF MCAODC_08215 0.56 -0.7 1,642,988 - panF MCAODC_08215 0.56 +0.3 1,642,999 + panF MCAODC_08215 0.57 +0.2 1,642,999 + panF MCAODC_08215 0.57 -0.7 1,642,999 + panF MCAODC_08215 0.57 -0.8 1,643,000 - panF MCAODC_08215 0.57 +0.3 1,643,017 + panF MCAODC_08215 0.58 +0.4 1,643,018 - panF MCAODC_08215 0.58 +2.3 1,643,018 - panF MCAODC_08215 0.58 +0.8 1,643,018 - panF MCAODC_08215 0.58 +0.9 1,643,112 + panF MCAODC_08215 0.64 -1.6 1,643,114 + panF MCAODC_08215 0.65 -0.2 1,643,114 + panF MCAODC_08215 0.65 -0.4 1,643,114 + panF MCAODC_08215 0.65 +0.5 1,643,114 + panF MCAODC_08215 0.65 +0.2 1,643,114 + panF MCAODC_08215 0.65 -0.6 1,643,114 + panF MCAODC_08215 0.65 +2.9 1,643,114 + panF MCAODC_08215 0.65 +0.4 1,643,115 - panF MCAODC_08215 0.65 +0.3 1,643,115 - panF MCAODC_08215 0.65 -0.1 1,643,115 - panF MCAODC_08215 0.65 +0.0 1,643,115 - panF MCAODC_08215 0.65 +0.6 1,643,115 - panF MCAODC_08215 0.65 +1.5 1,643,116 + panF MCAODC_08215 0.65 +0.6 1,643,116 + panF MCAODC_08215 0.65 -0.9 1,643,116 + panF MCAODC_08215 0.65 -0.0 1,643,117 - panF MCAODC_08215 0.65 -0.0 1,643,117 - panF MCAODC_08215 0.65 -0.4 1,643,130 + panF MCAODC_08215 0.66 -0.8 1,643,316 - panF MCAODC_08215 0.78 -0.2 1,643,352 + panF MCAODC_08215 0.81 +0.6 1,643,415 - panF MCAODC_08215 0.85 -0.6 1,643,420 + panF MCAODC_08215 0.86 +1.2 1,643,420 + panF MCAODC_08215 0.86 +0.6 1,643,442 + panF MCAODC_08215 0.87 +0.4 1,643,460 + panF MCAODC_08215 0.88 +0.2 1,643,460 + panF MCAODC_08215 0.88 +0.1 1,643,460 + panF MCAODC_08215 0.88 +0.1 1,643,460 + panF MCAODC_08215 0.88 +0.8 1,643,461 - panF MCAODC_08215 0.88 -0.2 1,643,461 - panF MCAODC_08215 0.88 -1.0 1,643,461 - panF MCAODC_08215 0.88 +0.0 1,643,462 + panF MCAODC_08215 0.88 +0.1 1,643,462 + panF MCAODC_08215 0.88 -0.6 1,643,462 + panF MCAODC_08215 0.88 +1.0 1,643,463 - panF MCAODC_08215 0.89 +1.9 1,643,463 - panF MCAODC_08215 0.89 -0.4 1,643,463 - panF MCAODC_08215 0.89 +1.1 1,643,463 - panF MCAODC_08215 0.89 -0.3 1,643,522 + +0.4 1,643,523 - -0.1 1,643,574 + -1.1 1,643,594 + -0.3 1,643,608 + -1.3 1,643,609 - +0.2 1,643,614 + +1.9 1,643,614 + +1.6 1,643,690 - yhdT MCAODC_08220 0.30 -2.2 1,643,833 + yhdT MCAODC_08220 0.88 -1.0 1,643,896 + +0.4 1,643,896 + +0.6 1,643,897 - -1.2 1,643,897 - +0.6 1,643,897 - +0.2 1,643,901 + +0.9 1,643,901 + +0.6
Or see this region's nucleotide sequence