Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt katG and metF are separated by 328 nucleotides metF and metL are separated by 348 nucleotides
MCAODC_04160: katG - catalase/peroxidase HPI, at 843,255 to 845,435
katG
MCAODC_04165: metF - methylenetetrahydrofolate reductase, at 845,764 to 846,654
metF
MCAODC_04170: metL - bifunctional aspartate kinase/homoserine dehydrogenase II, at 847,003 to 849,435
metL
Position (kb) 845
846
847 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 844.850 kb on + strand, within katG at 844.851 kb on - strand, within katG at 844.904 kb on + strand, within katG at 844.978 kb on + strand, within katG at 844.978 kb on + strand, within katG at 844.978 kb on + strand, within katG at 844.978 kb on + strand, within katG at 844.979 kb on - strand, within katG at 845.025 kb on + strand, within katG at 845.025 kb on + strand, within katG at 845.025 kb on + strand, within katG at 845.025 kb on + strand, within katG at 845.025 kb on + strand, within katG at 845.026 kb on - strand, within katG at 845.026 kb on - strand, within katG at 845.026 kb on - strand, within katG at 845.026 kb on - strand, within katG at 845.026 kb on - strand, within katG at 845.026 kb on - strand, within katG at 845.026 kb on - strand, within katG at 845.026 kb on - strand, within katG at 845.105 kb on - strand, within katG at 845.105 kb on - strand, within katG at 845.130 kb on - strand, within katG at 845.136 kb on - strand, within katG at 845.149 kb on + strand, within katG at 845.149 kb on + strand, within katG at 845.150 kb on - strand, within katG at 845.225 kb on - strand at 845.286 kb on - strand at 845.286 kb on - strand at 845.299 kb on - strand at 845.494 kb on - strand at 845.518 kb on + strand at 845.519 kb on - strand at 845.531 kb on - strand at 845.534 kb on + strand at 845.534 kb on + strand at 845.534 kb on + strand at 845.535 kb on - strand at 845.554 kb on + strand at 845.575 kb on - strand at 845.615 kb on + strand at 845.628 kb on + strand at 845.629 kb on - strand at 845.629 kb on - strand at 845.636 kb on + strand at 845.637 kb on - strand at 845.647 kb on + strand at 845.648 kb on - strand at 845.750 kb on - strand at 845.761 kb on + strand at 845.761 kb on + strand at 845.762 kb on - strand at 845.766 kb on - strand at 845.766 kb on - strand at 845.766 kb on - strand at 845.768 kb on - strand at 845.824 kb on - strand at 845.829 kb on + strand at 845.829 kb on + strand at 845.830 kb on - strand at 845.830 kb on - strand at 845.831 kb on + strand at 845.831 kb on + strand at 845.832 kb on - strand at 845.832 kb on - strand at 845.832 kb on - strand at 845.832 kb on - strand at 845.890 kb on - strand, within metF at 846.009 kb on + strand, within metF at 846.009 kb on + strand, within metF at 846.009 kb on + strand, within metF at 846.010 kb on - strand, within metF at 846.010 kb on - strand, within metF at 846.084 kb on - strand, within metF at 846.112 kb on - strand, within metF at 846.217 kb on - strand, within metF at 846.239 kb on - strand, within metF at 846.264 kb on - strand, within metF at 846.264 kb on - strand, within metF at 846.264 kb on - strand, within metF at 846.264 kb on - strand, within metF at 846.264 kb on - strand, within metF at 846.264 kb on - strand, within metF at 846.264 kb on - strand, within metF at 846.277 kb on - strand, within metF at 846.315 kb on + strand, within metF at 846.316 kb on - strand, within metF at 846.324 kb on + strand, within metF at 846.331 kb on - strand, within metF at 846.338 kb on + strand, within metF at 846.387 kb on + strand, within metF at 846.387 kb on + strand, within metF at 846.387 kb on + strand, within metF at 846.387 kb on + strand, within metF at 846.387 kb on + strand, within metF at 846.387 kb on + strand, within metF at 846.388 kb on - strand, within metF at 846.388 kb on - strand, within metF at 846.423 kb on + strand, within metF at 846.423 kb on + strand, within metF at 846.424 kb on - strand, within metF at 846.424 kb on - strand, within metF at 846.432 kb on + strand, within metF at 846.432 kb on + strand, within metF at 846.433 kb on - strand, within metF at 846.435 kb on + strand, within metF at 846.435 kb on + strand, within metF at 846.435 kb on + strand, within metF at 846.436 kb on - strand, within metF at 846.436 kb on - strand, within metF at 846.448 kb on - strand, within metF at 846.476 kb on + strand, within metF at 846.477 kb on - strand, within metF at 846.477 kb on - strand, within metF at 846.477 kb on - strand, within metF at 846.487 kb on + strand, within metF at 846.488 kb on - strand, within metF at 846.510 kb on + strand, within metF at 846.654 kb on + strand at 846.654 kb on + strand at 846.654 kb on + strand at 846.654 kb on + strand at 846.655 kb on - strand at 846.655 kb on - strand at 846.659 kb on + strand at 846.659 kb on + strand at 846.659 kb on + strand at 846.677 kb on + strand at 846.677 kb on + strand at 846.677 kb on + strand at 846.681 kb on + strand at 846.681 kb on + strand at 846.681 kb on + strand at 846.681 kb on + strand at 846.681 kb on + strand at 846.681 kb on + strand at 846.682 kb on - strand at 846.682 kb on - strand at 846.682 kb on - strand at 846.682 kb on - strand at 846.682 kb on - strand at 846.683 kb on + strand at 846.683 kb on + strand at 846.683 kb on + strand at 846.683 kb on + strand at 846.683 kb on + strand at 846.683 kb on + strand at 846.683 kb on + strand at 846.683 kb on + strand at 846.683 kb on + strand at 846.683 kb on + strand at 846.683 kb on + strand at 846.683 kb on + strand at 846.684 kb on - strand at 846.684 kb on - strand at 846.684 kb on - strand at 846.684 kb on - strand at 846.684 kb on - strand at 846.684 kb on - strand at 846.684 kb on - strand at 846.684 kb on - strand at 846.684 kb on - strand at 846.684 kb on - strand at 846.684 kb on - strand at 846.684 kb on - strand at 846.816 kb on + strand at 846.816 kb on + strand at 846.817 kb on - strand at 846.817 kb on - strand at 846.860 kb on + strand at 846.860 kb on + strand at 846.867 kb on + strand at 846.867 kb on + strand at 846.867 kb on + strand at 846.867 kb on + strand at 846.868 kb on - strand at 846.868 kb on - strand at 846.868 kb on - strand at 846.868 kb on - strand at 846.868 kb on - strand at 846.868 kb on - strand at 846.875 kb on + strand at 846.875 kb on + strand at 846.875 kb on + strand at 846.875 kb on + strand at 846.876 kb on - strand at 846.876 kb on - strand at 846.876 kb on - strand at 846.876 kb on - strand at 846.876 kb on - strand at 846.876 kb on - strand at 846.879 kb on + strand at 846.879 kb on + strand at 846.880 kb on - strand at 846.880 kb on - strand at 846.928 kb on - strand at 846.943 kb on - strand at 846.988 kb on - strand at 846.991 kb on - strand at 846.991 kb on - strand at 847.141 kb on + strand at 847.281 kb on + strand, within metL at 847.357 kb on + strand, within metL at 847.357 kb on + strand, within metL at 847.357 kb on + strand, within metL at 847.357 kb on + strand, within metL at 847.358 kb on - strand, within metL at 847.358 kb on - strand, within metL at 847.358 kb on - strand, within metL at 847.358 kb on - strand, within metL at 847.417 kb on + strand, within metL at 847.418 kb on - strand, within metL at 847.418 kb on - strand, within metL at 847.418 kb on - strand, within metL at 847.569 kb on + strand, within metL at 847.569 kb on + strand, within metL at 847.569 kb on + strand, within metL at 847.570 kb on - strand, within metL at 847.603 kb on - strand, within metL at 847.603 kb on - strand, within metL at 847.640 kb on + strand, within metL at 847.640 kb on + strand, within metL at 847.640 kb on + strand, within metL at 847.640 kb on + strand, within metL at 847.640 kb on + strand, within metL at 847.640 kb on + strand, within metL at 847.640 kb on + strand, within metL at 847.640 kb on + strand, within metL at 847.640 kb on + strand, within metL at 847.640 kb on + strand, within metL at 847.640 kb on + strand, within metL at 847.640 kb on + strand, within metL at 847.640 kb on + strand, within metL at 847.641 kb on - strand, within metL at 847.641 kb on - strand, within metL at 847.641 kb on - strand, within metL at 847.643 kb on - strand, within metL
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101_WM remove 844,850 + katG MCAODC_04160 0.73 -0.0 844,851 - katG MCAODC_04160 0.73 +0.4 844,904 + katG MCAODC_04160 0.76 -0.3 844,978 + katG MCAODC_04160 0.79 +0.0 844,978 + katG MCAODC_04160 0.79 -0.4 844,978 + katG MCAODC_04160 0.79 -0.4 844,978 + katG MCAODC_04160 0.79 +0.2 844,979 - katG MCAODC_04160 0.79 +1.7 845,025 + katG MCAODC_04160 0.81 +1.0 845,025 + katG MCAODC_04160 0.81 +0.3 845,025 + katG MCAODC_04160 0.81 +1.7 845,025 + katG MCAODC_04160 0.81 +3.0 845,025 + katG MCAODC_04160 0.81 -0.9 845,026 - katG MCAODC_04160 0.81 +0.5 845,026 - katG MCAODC_04160 0.81 -0.9 845,026 - katG MCAODC_04160 0.81 -0.7 845,026 - katG MCAODC_04160 0.81 -0.5 845,026 - katG MCAODC_04160 0.81 +1.4 845,026 - katG MCAODC_04160 0.81 +0.3 845,026 - katG MCAODC_04160 0.81 -0.9 845,026 - katG MCAODC_04160 0.81 +0.5 845,105 - katG MCAODC_04160 0.85 +2.4 845,105 - katG MCAODC_04160 0.85 +0.1 845,130 - katG MCAODC_04160 0.86 +0.7 845,136 - katG MCAODC_04160 0.86 +0.0 845,149 + katG MCAODC_04160 0.87 -0.4 845,149 + katG MCAODC_04160 0.87 +0.8 845,150 - katG MCAODC_04160 0.87 +1.0 845,225 - -0.1 845,286 - -0.0 845,286 - -0.5 845,299 - +0.6 845,494 - -0.2 845,518 + -0.3 845,519 - +0.7 845,531 - -0.9 845,534 + +0.1 845,534 + +1.2 845,534 + -0.8 845,535 - -0.3 845,554 + -0.0 845,575 - -0.6 845,615 + +1.9 845,628 + -0.5 845,629 - -0.1 845,629 - -0.4 845,636 + +0.4 845,637 - +0.0 845,647 + +1.4 845,648 - +0.1 845,750 - -0.1 845,761 + -1.8 845,761 + -0.3 845,762 - -1.3 845,766 - +0.1 845,766 - -0.8 845,766 - +0.1 845,768 - -0.9 845,824 - -3.6 845,829 + -3.0 845,829 + -4.0 845,830 - -4.0 845,830 - -0.9 845,831 + -1.2 845,831 + -1.6 845,832 - -2.9 845,832 - -2.3 845,832 - -2.9 845,832 - -4.2 845,890 - metF MCAODC_04165 0.14 -3.6 846,009 + metF MCAODC_04165 0.27 -3.6 846,009 + metF MCAODC_04165 0.27 -2.0 846,009 + metF MCAODC_04165 0.27 -2.0 846,010 - metF MCAODC_04165 0.28 -4.8 846,010 - metF MCAODC_04165 0.28 -2.1 846,084 - metF MCAODC_04165 0.36 -4.4 846,112 - metF MCAODC_04165 0.39 -4.2 846,217 - metF MCAODC_04165 0.51 -1.7 846,239 - metF MCAODC_04165 0.53 -3.0 846,264 - metF MCAODC_04165 0.56 -1.0 846,264 - metF MCAODC_04165 0.56 -2.5 846,264 - metF MCAODC_04165 0.56 -3.0 846,264 - metF MCAODC_04165 0.56 +0.0 846,264 - metF MCAODC_04165 0.56 -1.8 846,264 - metF MCAODC_04165 0.56 -2.8 846,264 - metF MCAODC_04165 0.56 -5.0 846,277 - metF MCAODC_04165 0.58 -3.3 846,315 + metF MCAODC_04165 0.62 -3.0 846,316 - metF MCAODC_04165 0.62 -0.5 846,324 + metF MCAODC_04165 0.63 -3.6 846,331 - metF MCAODC_04165 0.64 -2.3 846,338 + metF MCAODC_04165 0.64 -4.3 846,387 + metF MCAODC_04165 0.70 -2.3 846,387 + metF MCAODC_04165 0.70 -2.8 846,387 + metF MCAODC_04165 0.70 -3.6 846,387 + metF MCAODC_04165 0.70 -0.4 846,387 + metF MCAODC_04165 0.70 -2.8 846,387 + metF MCAODC_04165 0.70 -4.3 846,388 - metF MCAODC_04165 0.70 -3.6 846,388 - metF MCAODC_04165 0.70 -4.0 846,423 + metF MCAODC_04165 0.74 -1.6 846,423 + metF MCAODC_04165 0.74 -2.9 846,424 - metF MCAODC_04165 0.74 -0.6 846,424 - metF MCAODC_04165 0.74 -4.5 846,432 + metF MCAODC_04165 0.75 -3.2 846,432 + metF MCAODC_04165 0.75 -4.4 846,433 - metF MCAODC_04165 0.75 -2.5 846,435 + metF MCAODC_04165 0.75 -2.9 846,435 + metF MCAODC_04165 0.75 -3.4 846,435 + metF MCAODC_04165 0.75 -2.2 846,436 - metF MCAODC_04165 0.75 -4.1 846,436 - metF MCAODC_04165 0.75 -3.1 846,448 - metF MCAODC_04165 0.77 -0.7 846,476 + metF MCAODC_04165 0.80 -3.1 846,477 - metF MCAODC_04165 0.80 -4.6 846,477 - metF MCAODC_04165 0.80 -3.0 846,477 - metF MCAODC_04165 0.80 -2.5 846,487 + metF MCAODC_04165 0.81 -3.4 846,488 - metF MCAODC_04165 0.81 -3.1 846,510 + metF MCAODC_04165 0.84 -3.2 846,654 + -2.3 846,654 + -2.5 846,654 + -2.9 846,654 + -1.9 846,655 - -4.7 846,655 - +1.0 846,659 + -2.4 846,659 + -3.2 846,659 + -1.9 846,677 + -2.6 846,677 + -4.0 846,677 + +1.4 846,681 + -3.4 846,681 + -3.2 846,681 + -3.8 846,681 + -1.5 846,681 + -1.1 846,681 + -3.9 846,682 - +0.0 846,682 - +0.5 846,682 - -0.1 846,682 - -0.0 846,682 - +0.9 846,683 + -1.6 846,683 + -2.3 846,683 + -4.3 846,683 + -0.9 846,683 + -2.6 846,683 + -2.0 846,683 + -2.9 846,683 + -0.9 846,683 + -1.8 846,683 + -4.8 846,683 + -3.2 846,683 + -5.3 846,684 - +0.3 846,684 - +0.2 846,684 - -2.8 846,684 - -0.6 846,684 - +0.3 846,684 - -0.1 846,684 - +1.4 846,684 - -0.3 846,684 - -1.6 846,684 - -0.0 846,684 - -0.4 846,684 - +0.1 846,816 + -2.1 846,816 + -0.2 846,817 - +1.0 846,817 - +0.5 846,860 + +0.1 846,860 + +0.4 846,867 + -0.4 846,867 + +0.2 846,867 + -1.6 846,867 + -0.8 846,868 - -1.0 846,868 - -0.2 846,868 - -1.2 846,868 - -0.5 846,868 - -0.4 846,868 - +1.2 846,875 + +2.6 846,875 + +0.8 846,875 + +0.3 846,875 + -0.6 846,876 - +0.0 846,876 - +1.4 846,876 - -0.2 846,876 - -1.3 846,876 - -0.8 846,876 - -0.3 846,879 + +2.0 846,879 + +0.5 846,880 - +0.3 846,880 - -0.1 846,928 - -0.7 846,943 - -1.2 846,988 - -1.3 846,991 - -0.2 846,991 - -0.7 847,141 + +0.1 847,281 + metL MCAODC_04170 0.11 -0.3 847,357 + metL MCAODC_04170 0.15 +0.0 847,357 + metL MCAODC_04170 0.15 -1.2 847,357 + metL MCAODC_04170 0.15 -1.5 847,357 + metL MCAODC_04170 0.15 -0.2 847,358 - metL MCAODC_04170 0.15 -1.4 847,358 - metL MCAODC_04170 0.15 -1.6 847,358 - metL MCAODC_04170 0.15 -0.0 847,358 - metL MCAODC_04170 0.15 -0.8 847,417 + metL MCAODC_04170 0.17 -0.5 847,418 - metL MCAODC_04170 0.17 -0.5 847,418 - metL MCAODC_04170 0.17 -1.4 847,418 - metL MCAODC_04170 0.17 -1.7 847,569 + metL MCAODC_04170 0.23 -2.1 847,569 + metL MCAODC_04170 0.23 +1.2 847,569 + metL MCAODC_04170 0.23 -1.3 847,570 - metL MCAODC_04170 0.23 -0.5 847,603 - metL MCAODC_04170 0.25 +0.5 847,603 - metL MCAODC_04170 0.25 -0.8 847,640 + metL MCAODC_04170 0.26 -2.2 847,640 + metL MCAODC_04170 0.26 -0.6 847,640 + metL MCAODC_04170 0.26 -1.5 847,640 + metL MCAODC_04170 0.26 -0.1 847,640 + metL MCAODC_04170 0.26 -1.3 847,640 + metL MCAODC_04170 0.26 +0.4 847,640 + metL MCAODC_04170 0.26 -0.7 847,640 + metL MCAODC_04170 0.26 -0.3 847,640 + metL MCAODC_04170 0.26 -1.7 847,640 + metL MCAODC_04170 0.26 -0.5 847,640 + metL MCAODC_04170 0.26 +1.2 847,640 + metL MCAODC_04170 0.26 +0.2 847,640 + metL MCAODC_04170 0.26 +0.2 847,641 - metL MCAODC_04170 0.26 -0.6 847,641 - metL MCAODC_04170 0.26 -0.8 847,641 - metL MCAODC_04170 0.26 -1.6 847,643 - metL MCAODC_04170 0.26 -0.2
Or see this region's nucleotide sequence