Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dinF and lexA are separated by 72 nucleotides lexA and dgkA are separated by 109 nucleotides dgkA and plsB are separated by 170 nucleotides
MCAODC_03560: dinF - MATE family efflux transporter DinF, at 712,608 to 713,933
dinF
MCAODC_03565: lexA - transcriptional repressor LexA, at 714,006 to 714,614
lexA
MCAODC_03570: dgkA - diacylglycerol kinase, at 714,724 to 715,092
dgkA
MCAODC_03575: plsB - glycerol-3-phosphate 1-O-acyltransferase PlsB, at 715,263 to 717,686
plsB
Position (kb) 714
715 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 713.039 kb on - strand, within dinF at 713.039 kb on - strand, within dinF at 713.039 kb on - strand, within dinF at 713.039 kb on - strand, within dinF at 713.163 kb on + strand, within dinF at 713.165 kb on - strand, within dinF at 713.213 kb on + strand, within dinF at 713.214 kb on - strand, within dinF at 713.222 kb on + strand, within dinF at 713.304 kb on - strand, within dinF at 713.381 kb on + strand, within dinF at 713.381 kb on + strand, within dinF at 713.382 kb on - strand, within dinF at 713.382 kb on - strand, within dinF at 713.382 kb on - strand, within dinF at 713.382 kb on - strand, within dinF at 713.440 kb on - strand, within dinF at 713.490 kb on + strand, within dinF at 713.490 kb on + strand, within dinF at 713.490 kb on + strand, within dinF at 713.490 kb on + strand, within dinF at 713.491 kb on - strand, within dinF at 713.491 kb on - strand, within dinF at 713.491 kb on - strand, within dinF at 713.494 kb on - strand, within dinF at 713.585 kb on + strand, within dinF at 713.585 kb on + strand, within dinF at 713.586 kb on - strand, within dinF at 713.586 kb on - strand, within dinF at 713.613 kb on - strand, within dinF at 713.704 kb on + strand, within dinF at 713.704 kb on + strand, within dinF at 713.705 kb on - strand, within dinF at 713.705 kb on - strand, within dinF at 713.756 kb on + strand, within dinF at 713.868 kb on - strand at 713.887 kb on - strand at 713.910 kb on - strand at 714.002 kb on + strand at 714.002 kb on + strand at 714.002 kb on + strand at 714.002 kb on + strand at 714.003 kb on - strand at 714.003 kb on - strand at 714.003 kb on - strand at 714.003 kb on - strand at 714.007 kb on + strand at 714.008 kb on - strand at 714.008 kb on - strand at 714.631 kb on - strand at 714.633 kb on - strand at 714.635 kb on - strand at 714.635 kb on - strand at 714.654 kb on - strand at 714.655 kb on + strand at 714.656 kb on - strand at 714.681 kb on + strand at 714.681 kb on + strand at 714.682 kb on - strand at 714.694 kb on - strand at 714.759 kb on + strand at 714.759 kb on + strand at 714.759 kb on + strand at 714.759 kb on + strand at 714.804 kb on + strand, within dgkA at 714.810 kb on + strand, within dgkA at 714.833 kb on + strand, within dgkA at 714.834 kb on - strand, within dgkA at 714.915 kb on + strand, within dgkA at 714.977 kb on - strand, within dgkA at 714.982 kb on + strand, within dgkA at 714.982 kb on + strand, within dgkA at 715.080 kb on + strand at 715.080 kb on + strand at 715.080 kb on + strand at 715.081 kb on - strand at 715.081 kb on - strand at 715.083 kb on + strand at 715.084 kb on - strand at 715.084 kb on - strand at 715.084 kb on - strand at 715.107 kb on + strand at 715.107 kb on + strand at 715.107 kb on + strand at 715.107 kb on + strand at 715.107 kb on + strand at 715.108 kb on - strand at 715.108 kb on - strand at 715.124 kb on + strand at 715.124 kb on + strand at 715.132 kb on + strand at 715.132 kb on + strand at 715.138 kb on + strand at 715.139 kb on - strand at 715.188 kb on - strand at 715.237 kb on + strand at 715.237 kb on + strand at 715.237 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101_WM remove 713,039 - dinF MCAODC_03560 0.33 +1.0 713,039 - dinF MCAODC_03560 0.33 +3.7 713,039 - dinF MCAODC_03560 0.33 -0.2 713,039 - dinF MCAODC_03560 0.33 -1.3 713,163 + dinF MCAODC_03560 0.42 -0.0 713,165 - dinF MCAODC_03560 0.42 -0.6 713,213 + dinF MCAODC_03560 0.46 -0.0 713,214 - dinF MCAODC_03560 0.46 +1.7 713,222 + dinF MCAODC_03560 0.46 -1.4 713,304 - dinF MCAODC_03560 0.52 +0.1 713,381 + dinF MCAODC_03560 0.58 +0.0 713,381 + dinF MCAODC_03560 0.58 -0.7 713,382 - dinF MCAODC_03560 0.58 -0.3 713,382 - dinF MCAODC_03560 0.58 -1.0 713,382 - dinF MCAODC_03560 0.58 -0.2 713,382 - dinF MCAODC_03560 0.58 -2.4 713,440 - dinF MCAODC_03560 0.63 -0.9 713,490 + dinF MCAODC_03560 0.67 -0.7 713,490 + dinF MCAODC_03560 0.67 -0.6 713,490 + dinF MCAODC_03560 0.67 +0.7 713,490 + dinF MCAODC_03560 0.67 +0.1 713,491 - dinF MCAODC_03560 0.67 -1.1 713,491 - dinF MCAODC_03560 0.67 -0.0 713,491 - dinF MCAODC_03560 0.67 -0.6 713,494 - dinF MCAODC_03560 0.67 +0.8 713,585 + dinF MCAODC_03560 0.74 -0.0 713,585 + dinF MCAODC_03560 0.74 +0.4 713,586 - dinF MCAODC_03560 0.74 +0.7 713,586 - dinF MCAODC_03560 0.74 +0.2 713,613 - dinF MCAODC_03560 0.76 -0.2 713,704 + dinF MCAODC_03560 0.83 -1.5 713,704 + dinF MCAODC_03560 0.83 +1.4 713,705 - dinF MCAODC_03560 0.83 -1.0 713,705 - dinF MCAODC_03560 0.83 -0.2 713,756 + dinF MCAODC_03560 0.87 +0.1 713,868 - -0.2 713,887 - +1.0 713,910 - +0.7 714,002 + -0.6 714,002 + -0.4 714,002 + +0.3 714,002 + +1.4 714,003 - +0.0 714,003 - -0.1 714,003 - -0.3 714,003 - +0.3 714,007 + -0.2 714,008 - -0.8 714,008 - +0.9 714,631 - -0.8 714,633 - -0.5 714,635 - +1.7 714,635 - +1.7 714,654 - -0.5 714,655 + +0.1 714,656 - +1.4 714,681 + +0.6 714,681 + -1.4 714,682 - -0.2 714,694 - +0.4 714,759 + -0.6 714,759 + +0.4 714,759 + +0.2 714,759 + +0.2 714,804 + dgkA MCAODC_03570 0.22 -0.4 714,810 + dgkA MCAODC_03570 0.23 -0.2 714,833 + dgkA MCAODC_03570 0.30 +0.4 714,834 - dgkA MCAODC_03570 0.30 +2.0 714,915 + dgkA MCAODC_03570 0.52 +1.7 714,977 - dgkA MCAODC_03570 0.69 -0.6 714,982 + dgkA MCAODC_03570 0.70 +1.5 714,982 + dgkA MCAODC_03570 0.70 -0.7 715,080 + -0.0 715,080 + +0.4 715,080 + +0.1 715,081 - -0.2 715,081 - -0.7 715,083 + -0.0 715,084 - +0.2 715,084 - -1.6 715,084 - -0.5 715,107 + +0.4 715,107 + -0.7 715,107 + +1.4 715,107 + -1.3 715,107 + +1.1 715,108 - -0.1 715,108 - -1.8 715,124 + +0.1 715,124 + -0.9 715,132 + -0.4 715,132 + +0.3 715,138 + +0.4 715,139 - -0.3 715,188 - -1.3 715,237 + +0.1 715,237 + +2.1 715,237 + +0.5
Or see this region's nucleotide sequence