Strain Fitness in Escherichia coli ECRC101 around MCAODC_01625
Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Control_ECRC101_WM |
---|---|---|---|---|---|
remove | |||||
313,421 | + | -1.7 | |||
313,422 | - | -0.5 | |||
313,422 | - | -2.6 | |||
313,422 | - | -3.8 | |||
313,429 | + | -1.3 | |||
313,441 | + | -2.1 | |||
313,452 | + | -2.3 | |||
313,484 | + | -1.1 | |||
313,484 | + | -2.9 | |||
313,484 | + | -3.4 | |||
313,513 | + | -1.5 | |||
313,513 | + | -2.5 | |||
313,513 | + | -1.0 | |||
313,514 | - | -2.0 | |||
313,520 | + | -3.1 | |||
313,599 | - | thrB | MCAODC_01620 | 0.17 | -3.2 |
313,685 | + | thrB | MCAODC_01620 | 0.26 | -2.8 |
313,729 | + | thrB | MCAODC_01620 | 0.31 | -2.3 |
313,730 | - | thrB | MCAODC_01620 | 0.31 | -2.9 |
313,832 | + | thrB | MCAODC_01620 | 0.42 | -1.7 |
313,922 | + | thrB | MCAODC_01620 | 0.52 | -2.0 |
313,922 | + | thrB | MCAODC_01620 | 0.52 | -0.6 |
313,923 | - | thrB | MCAODC_01620 | 0.52 | -2.7 |
314,018 | + | thrB | MCAODC_01620 | 0.62 | -1.2 |
314,085 | + | thrB | MCAODC_01620 | 0.69 | +1.3 |
314,176 | + | thrB | MCAODC_01620 | 0.79 | -1.5 |
314,268 | + | thrB | MCAODC_01620 | 0.89 | -3.9 |
314,268 | + | thrB | MCAODC_01620 | 0.89 | -1.5 |
314,268 | + | thrB | MCAODC_01620 | 0.89 | -0.0 |
314,269 | - | thrB | MCAODC_01620 | 0.89 | -2.4 |
314,269 | - | thrB | MCAODC_01620 | 0.89 | -2.8 |
314,269 | - | thrB | MCAODC_01620 | 0.89 | -1.6 |
314,269 | - | thrB | MCAODC_01620 | 0.89 | -0.4 |
314,269 | - | thrB | MCAODC_01620 | 0.89 | -3.5 |
314,269 | - | thrB | MCAODC_01620 | 0.89 | -0.1 |
314,269 | - | thrB | MCAODC_01620 | 0.89 | -3.0 |
314,269 | - | thrB | MCAODC_01620 | 0.89 | -1.9 |
314,269 | - | thrB | MCAODC_01620 | 0.89 | -2.1 |
314,269 | - | thrB | MCAODC_01620 | 0.89 | -2.5 |
314,336 | + | -3.4 | |||
314,337 | - | -3.9 | |||
314,384 | - | -2.1 | |||
314,384 | - | -1.0 | |||
314,401 | - | -1.0 | |||
314,401 | - | -1.6 | |||
314,401 | - | -1.5 | |||
314,404 | + | -4.3 | |||
314,404 | + | -2.3 | |||
314,405 | - | -1.6 | |||
314,405 | - | +1.1 | |||
314,405 | - | -1.5 | |||
314,484 | - | -0.3 | |||
314,486 | + | -0.3 | |||
314,486 | + | -1.6 | |||
314,487 | - | -0.3 | |||
314,487 | - | -0.6 | |||
314,495 | + | -0.8 | |||
314,496 | - | -1.1 | |||
314,592 | + | -1.2 | |||
314,603 | + | -3.4 | |||
314,604 | - | -1.1 | |||
314,604 | - | -3.1 | |||
314,604 | - | -1.8 | |||
314,683 | - | thrA | MCAODC_01625 | 0.13 | -1.5 |
314,683 | - | thrA | MCAODC_01625 | 0.13 | -1.9 |
314,786 | - | thrA | MCAODC_01625 | 0.17 | -1.7 |
314,788 | + | thrA | MCAODC_01625 | 0.17 | +0.3 |
314,788 | + | thrA | MCAODC_01625 | 0.17 | -0.1 |
314,789 | - | thrA | MCAODC_01625 | 0.17 | -0.7 |
314,793 | + | thrA | MCAODC_01625 | 0.17 | -1.2 |
314,794 | - | thrA | MCAODC_01625 | 0.17 | +0.1 |
314,794 | - | thrA | MCAODC_01625 | 0.17 | -2.0 |
314,794 | - | thrA | MCAODC_01625 | 0.17 | +3.4 |
314,800 | + | thrA | MCAODC_01625 | 0.17 | -0.6 |
314,801 | - | thrA | MCAODC_01625 | 0.17 | -0.8 |
314,801 | - | thrA | MCAODC_01625 | 0.17 | -0.2 |
314,801 | - | thrA | MCAODC_01625 | 0.17 | +2.1 |
314,844 | - | thrA | MCAODC_01625 | 0.19 | -2.4 |
314,910 | + | thrA | MCAODC_01625 | 0.22 | -0.5 |
314,911 | - | thrA | MCAODC_01625 | 0.22 | +0.9 |
314,911 | - | thrA | MCAODC_01625 | 0.22 | -0.1 |
314,911 | - | thrA | MCAODC_01625 | 0.22 | -2.0 |
314,912 | + | thrA | MCAODC_01625 | 0.22 | -4.0 |
314,912 | + | thrA | MCAODC_01625 | 0.22 | -1.6 |
314,912 | + | thrA | MCAODC_01625 | 0.22 | -2.6 |
314,912 | + | thrA | MCAODC_01625 | 0.22 | -1.8 |
314,912 | + | thrA | MCAODC_01625 | 0.22 | -1.4 |
314,912 | + | thrA | MCAODC_01625 | 0.22 | -2.3 |
314,913 | - | thrA | MCAODC_01625 | 0.22 | -3.1 |
314,913 | - | thrA | MCAODC_01625 | 0.22 | -2.9 |
315,024 | - | thrA | MCAODC_01625 | 0.26 | -3.1 |
315,024 | - | thrA | MCAODC_01625 | 0.26 | -1.4 |
315,033 | + | thrA | MCAODC_01625 | 0.27 | +0.9 |
315,071 | + | thrA | MCAODC_01625 | 0.28 | -3.2 |
315,072 | - | thrA | MCAODC_01625 | 0.28 | -1.5 |
315,072 | - | thrA | MCAODC_01625 | 0.28 | -2.7 |
315,075 | - | thrA | MCAODC_01625 | 0.28 | +0.4 |
315,146 | + | thrA | MCAODC_01625 | 0.31 | -1.2 |
315,146 | + | thrA | MCAODC_01625 | 0.31 | -2.1 |
315,206 | + | thrA | MCAODC_01625 | 0.34 | -1.4 |
315,240 | + | thrA | MCAODC_01625 | 0.35 | -0.3 |
315,290 | - | thrA | MCAODC_01625 | 0.37 | -1.4 |
315,324 | + | thrA | MCAODC_01625 | 0.39 | -2.1 |
315,343 | + | thrA | MCAODC_01625 | 0.39 | -4.8 |
315,343 | + | thrA | MCAODC_01625 | 0.39 | -0.4 |
315,343 | + | thrA | MCAODC_01625 | 0.39 | -3.3 |
315,343 | + | thrA | MCAODC_01625 | 0.39 | -2.2 |
315,343 | + | thrA | MCAODC_01625 | 0.39 | +1.0 |
315,343 | + | thrA | MCAODC_01625 | 0.39 | -3.6 |
315,343 | + | thrA | MCAODC_01625 | 0.39 | -1.1 |
315,344 | - | thrA | MCAODC_01625 | 0.39 | -2.4 |
315,344 | - | thrA | MCAODC_01625 | 0.39 | -3.2 |
315,344 | - | thrA | MCAODC_01625 | 0.39 | -3.2 |
315,351 | + | thrA | MCAODC_01625 | 0.40 | -0.6 |
315,352 | - | thrA | MCAODC_01625 | 0.40 | -2.7 |
315,504 | + | thrA | MCAODC_01625 | 0.46 | -1.5 |
315,505 | - | thrA | MCAODC_01625 | 0.46 | -1.8 |
315,505 | - | thrA | MCAODC_01625 | 0.46 | -1.1 |
315,508 | + | thrA | MCAODC_01625 | 0.46 | -2.0 |
315,509 | - | thrA | MCAODC_01625 | 0.46 | -2.2 |
315,509 | - | thrA | MCAODC_01625 | 0.46 | -2.3 |
315,564 | + | thrA | MCAODC_01625 | 0.48 | -1.5 |
315,621 | + | thrA | MCAODC_01625 | 0.51 | -0.6 |
315,621 | + | thrA | MCAODC_01625 | 0.51 | -3.9 |
315,621 | + | thrA | MCAODC_01625 | 0.51 | -3.0 |
315,621 | + | thrA | MCAODC_01625 | 0.51 | -1.9 |
315,622 | - | thrA | MCAODC_01625 | 0.51 | -2.2 |
315,622 | - | thrA | MCAODC_01625 | 0.51 | -3.6 |
315,631 | + | thrA | MCAODC_01625 | 0.51 | -2.7 |
315,632 | - | thrA | MCAODC_01625 | 0.51 | -2.0 |
315,632 | - | thrA | MCAODC_01625 | 0.51 | -1.1 |
315,632 | - | thrA | MCAODC_01625 | 0.51 | -2.0 |
315,632 | - | thrA | MCAODC_01625 | 0.51 | -3.1 |
315,642 | + | thrA | MCAODC_01625 | 0.51 | -4.3 |
315,680 | - | thrA | MCAODC_01625 | 0.53 | -2.8 |
315,680 | - | thrA | MCAODC_01625 | 0.53 | -0.1 |
315,702 | - | thrA | MCAODC_01625 | 0.54 | -2.6 |
315,766 | - | thrA | MCAODC_01625 | 0.57 | -1.3 |
315,766 | - | thrA | MCAODC_01625 | 0.57 | -0.5 |
315,766 | - | thrA | MCAODC_01625 | 0.57 | -3.9 |
315,895 | - | thrA | MCAODC_01625 | 0.62 | -1.7 |
315,895 | - | thrA | MCAODC_01625 | 0.62 | -3.7 |
315,897 | + | thrA | MCAODC_01625 | 0.62 | -0.1 |
315,897 | + | thrA | MCAODC_01625 | 0.62 | -1.1 |
315,898 | - | thrA | MCAODC_01625 | 0.62 | -1.7 |
315,898 | - | thrA | MCAODC_01625 | 0.62 | -1.5 |
315,960 | + | thrA | MCAODC_01625 | 0.64 | -1.8 |
315,960 | + | thrA | MCAODC_01625 | 0.64 | -1.6 |
316,061 | + | thrA | MCAODC_01625 | 0.68 | -3.0 |
316,137 | + | thrA | MCAODC_01625 | 0.72 | -2.2 |
316,137 | + | thrA | MCAODC_01625 | 0.72 | -2.3 |
316,137 | + | thrA | MCAODC_01625 | 0.72 | -2.8 |
316,137 | + | thrA | MCAODC_01625 | 0.72 | -1.5 |
316,137 | + | thrA | MCAODC_01625 | 0.72 | -2.2 |
316,137 | + | thrA | MCAODC_01625 | 0.72 | -3.4 |
316,138 | - | thrA | MCAODC_01625 | 0.72 | -1.0 |
316,138 | - | thrA | MCAODC_01625 | 0.72 | -2.9 |
316,138 | - | thrA | MCAODC_01625 | 0.72 | -1.6 |
316,139 | + | thrA | MCAODC_01625 | 0.72 | -1.1 |
316,139 | + | thrA | MCAODC_01625 | 0.72 | -3.4 |
316,139 | + | thrA | MCAODC_01625 | 0.72 | -3.2 |
316,139 | + | thrA | MCAODC_01625 | 0.72 | +0.2 |
316,139 | + | thrA | MCAODC_01625 | 0.72 | -0.8 |
316,139 | + | thrA | MCAODC_01625 | 0.72 | -3.3 |
316,139 | + | thrA | MCAODC_01625 | 0.72 | -1.5 |
316,139 | + | thrA | MCAODC_01625 | 0.72 | -3.8 |
316,139 | + | thrA | MCAODC_01625 | 0.72 | -4.2 |
316,139 | + | thrA | MCAODC_01625 | 0.72 | -3.0 |
316,139 | + | thrA | MCAODC_01625 | 0.72 | -2.2 |
316,139 | + | thrA | MCAODC_01625 | 0.72 | -2.3 |
316,139 | + | thrA | MCAODC_01625 | 0.72 | -3.8 |
316,140 | - | thrA | MCAODC_01625 | 0.72 | -4.0 |
316,140 | - | thrA | MCAODC_01625 | 0.72 | -2.9 |
316,140 | - | thrA | MCAODC_01625 | 0.72 | -1.6 |
316,140 | - | thrA | MCAODC_01625 | 0.72 | -3.1 |
316,141 | + | thrA | MCAODC_01625 | 0.72 | -1.1 |
316,142 | - | thrA | MCAODC_01625 | 0.72 | -2.4 |
316,142 | - | thrA | MCAODC_01625 | 0.72 | -2.6 |
316,142 | - | thrA | MCAODC_01625 | 0.72 | -2.2 |
316,142 | - | thrA | MCAODC_01625 | 0.72 | -2.4 |
316,234 | + | thrA | MCAODC_01625 | 0.76 | -0.6 |
316,303 | - | thrA | MCAODC_01625 | 0.78 | -2.3 |
316,303 | - | thrA | MCAODC_01625 | 0.78 | -2.0 |
316,338 | + | thrA | MCAODC_01625 | 0.80 | -3.5 |
316,347 | + | thrA | MCAODC_01625 | 0.80 | -2.3 |
316,347 | + | thrA | MCAODC_01625 | 0.80 | -3.3 |
316,347 | + | thrA | MCAODC_01625 | 0.80 | -4.7 |
316,347 | + | thrA | MCAODC_01625 | 0.80 | -1.1 |
316,358 | + | thrA | MCAODC_01625 | 0.81 | -1.7 |
316,358 | + | thrA | MCAODC_01625 | 0.81 | -3.2 |
316,358 | + | thrA | MCAODC_01625 | 0.81 | -2.0 |
316,359 | - | thrA | MCAODC_01625 | 0.81 | -2.4 |
316,423 | + | thrA | MCAODC_01625 | 0.83 | -2.6 |
316,423 | + | thrA | MCAODC_01625 | 0.83 | -3.5 |
316,424 | - | thrA | MCAODC_01625 | 0.83 | -2.4 |
316,424 | - | thrA | MCAODC_01625 | 0.83 | -0.7 |
316,424 | - | thrA | MCAODC_01625 | 0.83 | -1.7 |
316,424 | - | thrA | MCAODC_01625 | 0.83 | -4.0 |
316,438 | - | thrA | MCAODC_01625 | 0.84 | -1.6 |
316,512 | + | thrA | MCAODC_01625 | 0.87 | +0.1 |
316,512 | + | thrA | MCAODC_01625 | 0.87 | -1.0 |
316,512 | + | thrA | MCAODC_01625 | 0.87 | -1.9 |
316,512 | + | thrA | MCAODC_01625 | 0.87 | -2.4 |
316,512 | + | thrA | MCAODC_01625 | 0.87 | -2.1 |
316,513 | - | thrA | MCAODC_01625 | 0.87 | -3.7 |
316,513 | - | thrA | MCAODC_01625 | 0.87 | -1.6 |
316,513 | - | thrA | MCAODC_01625 | 0.87 | -3.8 |
316,513 | - | thrA | MCAODC_01625 | 0.87 | -3.2 |
316,534 | + | thrA | MCAODC_01625 | 0.88 | -4.3 |
316,535 | - | thrA | MCAODC_01625 | 0.88 | -3.2 |
316,648 | - | -1.2 | |||
316,654 | + | -3.6 | |||
316,812 | + | -0.3 | |||
316,813 | - | -2.8 | |||
316,843 | + | -2.0 | |||
316,844 | - | -1.2 | |||
316,844 | - | -3.9 | |||
316,844 | - | -2.4 | |||
316,851 | + | -4.7 | |||
316,852 | - | +0.1 | |||
316,912 | - | -0.9 | |||
316,932 | - | thrL | MCAODC_01630 | 0.18 | -1.1 |
316,932 | - | thrL | MCAODC_01630 | 0.18 | -1.5 |
316,941 | - | thrL | MCAODC_01630 | 0.29 | -2.5 |
316,976 | + | thrL | MCAODC_01630 | 0.70 | -2.2 |
316,989 | - | thrL | MCAODC_01630 | 0.86 | -1.0 |
316,989 | - | thrL | MCAODC_01630 | 0.86 | -1.5 |
317,011 | + | +0.8 | |||
317,012 | - | -0.5 | |||
317,019 | - | -2.8 | |||
317,019 | - | -0.4 | |||
317,041 | - | -1.2 | |||
317,046 | + | -1.6 | |||
317,046 | + | -2.7 | |||
317,160 | + | +0.7 | |||
317,160 | + | +0.2 | |||
317,160 | + | -1.2 | |||
317,160 | + | -0.7 | |||
317,160 | + | -0.2 | |||
317,160 | + | +0.5 | |||
317,161 | - | -0.1 | |||
317,161 | - | -0.3 | |||
317,200 | + | -0.3 | |||
317,200 | + | -0.1 | |||
317,201 | - | +0.8 | |||
317,203 | + | +0.8 | |||
317,204 | - | -0.6 | |||
317,204 | - | +0.3 | |||
317,204 | - | -1.6 | |||
317,301 | + | lasT | MCAODC_01635 | 0.13 | +0.6 |
317,302 | - | lasT | MCAODC_01635 | 0.13 | -3.0 |
317,319 | + | lasT | MCAODC_01635 | 0.15 | +1.2 |
317,319 | + | lasT | MCAODC_01635 | 0.15 | -0.8 |
317,319 | + | lasT | MCAODC_01635 | 0.15 | -1.3 |
317,319 | + | lasT | MCAODC_01635 | 0.15 | +0.2 |
317,319 | + | lasT | MCAODC_01635 | 0.15 | +0.5 |
317,424 | + | lasT | MCAODC_01635 | 0.31 | +0.5 |
317,425 | - | lasT | MCAODC_01635 | 0.31 | +0.9 |
317,427 | + | lasT | MCAODC_01635 | 0.31 | +0.9 |
317,428 | + | lasT | MCAODC_01635 | 0.31 | -0.5 |
317,431 | - | lasT | MCAODC_01635 | 0.32 | +2.6 |
317,436 | + | lasT | MCAODC_01635 | 0.32 | +0.5 |
317,437 | - | lasT | MCAODC_01635 | 0.32 | -0.5 |
317,437 | - | lasT | MCAODC_01635 | 0.32 | -0.7 |
317,449 | + | lasT | MCAODC_01635 | 0.34 | +0.4 |
317,449 | + | lasT | MCAODC_01635 | 0.34 | -0.2 |
317,449 | + | lasT | MCAODC_01635 | 0.34 | -0.6 |
317,450 | - | lasT | MCAODC_01635 | 0.34 | +1.4 |
317,511 | - | lasT | MCAODC_01635 | 0.43 | +0.9 |
317,541 | - | lasT | MCAODC_01635 | 0.48 | +0.4 |
317,633 | + | lasT | MCAODC_01635 | 0.61 | +0.3 |
317,638 | + | lasT | MCAODC_01635 | 0.62 | -0.8 |
317,638 | + | lasT | MCAODC_01635 | 0.62 | -1.0 |
317,639 | - | lasT | MCAODC_01635 | 0.62 | +0.3 |
317,641 | + | lasT | MCAODC_01635 | 0.62 | +0.4 |
317,647 | + | lasT | MCAODC_01635 | 0.63 | -1.0 |
317,648 | - | lasT | MCAODC_01635 | 0.63 | +0.5 |
317,726 | + | lasT | MCAODC_01635 | 0.75 | -0.1 |
Or see this region's nucleotide sequence