Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt caiE and caiF are separated by 118 nucleotides caiF and MCAODC_01450 are separated by 34 nucleotides MCAODC_01450 and carB are separated by 7 nucleotides carB and carA are separated by 17 nucleotides
MCAODC_01440: caiE - carnitine operon protein CaiE, at 277,413 to 278,003
caiE
MCAODC_01445: caiF - carnitine metabolism transcriptional regulator CaiF, at 278,122 to 278,517
caiF
MCAODC_01450: MCAODC_01450 - hypothetical protein, at 278,552 to 278,770
_01450
MCAODC_01455: carB - carbamoyl-phosphate synthase large subunit, at 278,778 to 281,999
carB
MCAODC_01460: carA - carbamoyl phosphate synthase small subunit, at 282,017 to 283,165
carA
Position (kb) 278
279
280
281
282 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 277.834 kb on + strand, within caiE at 277.845 kb on - strand, within caiE at 277.845 kb on - strand, within caiE at 277.858 kb on + strand, within caiE at 277.887 kb on + strand, within caiE at 277.922 kb on - strand, within caiE at 277.995 kb on - strand at 278.056 kb on + strand at 278.107 kb on - strand at 278.107 kb on - strand at 278.107 kb on - strand at 278.124 kb on - strand at 278.133 kb on + strand at 278.241 kb on + strand, within caiF at 278.259 kb on - strand, within caiF at 278.287 kb on - strand, within caiF at 278.325 kb on + strand, within caiF at 278.325 kb on + strand, within caiF at 278.326 kb on - strand, within caiF at 278.326 kb on - strand, within caiF at 278.340 kb on + strand, within caiF at 278.353 kb on + strand, within caiF at 278.376 kb on + strand, within caiF at 278.376 kb on + strand, within caiF at 278.377 kb on - strand, within caiF at 278.377 kb on - strand, within caiF at 278.379 kb on - strand, within caiF at 278.388 kb on + strand, within caiF at 278.389 kb on - strand, within caiF at 278.487 kb on - strand at 278.487 kb on - strand at 278.487 kb on - strand at 278.504 kb on + strand at 278.517 kb on + strand at 278.517 kb on + strand at 278.518 kb on - strand at 278.608 kb on - strand, within MCAODC_01450 at 278.610 kb on + strand, within MCAODC_01450 at 278.610 kb on + strand, within MCAODC_01450 at 278.610 kb on + strand, within MCAODC_01450 at 278.611 kb on - strand, within MCAODC_01450 at 278.629 kb on + strand, within MCAODC_01450 at 278.641 kb on - strand, within MCAODC_01450 at 278.641 kb on - strand, within MCAODC_01450 at 278.652 kb on - strand, within MCAODC_01450 at 278.652 kb on - strand, within MCAODC_01450 at 278.652 kb on - strand, within MCAODC_01450 at 278.652 kb on - strand, within MCAODC_01450 at 278.652 kb on - strand, within MCAODC_01450 at 278.652 kb on - strand, within MCAODC_01450 at 278.652 kb on - strand, within MCAODC_01450 at 278.652 kb on - strand, within MCAODC_01450 at 278.685 kb on + strand, within MCAODC_01450 at 278.686 kb on - strand, within MCAODC_01450 at 278.690 kb on - strand, within MCAODC_01450 at 278.726 kb on - strand, within MCAODC_01450 at 278.732 kb on + strand, within MCAODC_01450 at 278.733 kb on - strand, within MCAODC_01450 at 278.777 kb on - strand at 278.780 kb on - strand at 278.780 kb on - strand at 278.891 kb on + strand at 278.891 kb on + strand at 278.891 kb on + strand at 278.891 kb on + strand at 278.891 kb on + strand at 278.892 kb on - strand at 278.894 kb on - strand at 278.894 kb on - strand at 278.965 kb on + strand at 278.965 kb on + strand at 278.965 kb on + strand at 278.965 kb on + strand at 278.965 kb on + strand at 278.966 kb on - strand at 278.966 kb on - strand at 278.966 kb on - strand at 278.966 kb on - strand at 278.966 kb on - strand at 278.966 kb on - strand at 278.966 kb on - strand at 278.969 kb on + strand at 278.969 kb on + strand at 278.969 kb on + strand at 278.969 kb on + strand at 278.969 kb on + strand at 278.970 kb on - strand at 278.970 kb on - strand at 278.972 kb on - strand at 278.972 kb on - strand at 278.972 kb on - strand at 278.972 kb on - strand at 279.028 kb on - strand at 279.028 kb on - strand at 279.337 kb on + strand, within carB at 279.338 kb on - strand, within carB at 279.338 kb on - strand, within carB at 279.340 kb on + strand, within carB at 279.351 kb on - strand, within carB at 279.363 kb on + strand, within carB at 279.455 kb on + strand, within carB at 279.487 kb on + strand, within carB at 279.488 kb on - strand, within carB at 279.576 kb on + strand, within carB at 279.576 kb on + strand, within carB at 279.576 kb on + strand, within carB at 279.577 kb on - strand, within carB at 279.577 kb on - strand, within carB at 279.577 kb on - strand, within carB at 279.577 kb on - strand, within carB at 279.597 kb on + strand, within carB at 279.597 kb on + strand, within carB at 279.597 kb on + strand, within carB at 279.598 kb on - strand, within carB at 279.598 kb on - strand, within carB at 279.605 kb on - strand, within carB at 279.720 kb on + strand, within carB at 279.720 kb on + strand, within carB at 279.720 kb on + strand, within carB at 279.815 kb on - strand, within carB at 279.847 kb on + strand, within carB at 279.847 kb on + strand, within carB at 279.847 kb on + strand, within carB at 279.848 kb on - strand, within carB at 279.909 kb on - strand, within carB at 279.996 kb on - strand, within carB at 280.150 kb on + strand, within carB at 280.151 kb on - strand, within carB at 280.196 kb on + strand, within carB at 280.203 kb on - strand, within carB at 280.209 kb on - strand, within carB at 280.252 kb on - strand, within carB at 280.261 kb on + strand, within carB at 280.360 kb on + strand, within carB at 280.361 kb on - strand, within carB at 280.361 kb on - strand, within carB at 280.369 kb on + strand, within carB at 280.369 kb on + strand, within carB at 280.369 kb on + strand, within carB at 280.369 kb on + strand, within carB at 280.369 kb on + strand, within carB at 280.369 kb on + strand, within carB at 280.370 kb on - strand, within carB at 280.370 kb on - strand, within carB at 280.370 kb on - strand, within carB at 280.370 kb on - strand, within carB at 280.375 kb on + strand, within carB at 280.376 kb on - strand, within carB at 280.376 kb on - strand, within carB at 280.376 kb on - strand, within carB at 280.409 kb on + strand, within carB at 280.409 kb on + strand, within carB at 280.423 kb on + strand, within carB at 280.424 kb on - strand, within carB at 280.457 kb on + strand, within carB at 280.476 kb on + strand, within carB at 280.476 kb on + strand, within carB at 280.477 kb on - strand, within carB at 280.609 kb on - strand, within carB at 280.609 kb on - strand, within carB at 280.695 kb on - strand, within carB at 280.695 kb on - strand, within carB at 280.939 kb on + strand, within carB at 280.940 kb on - strand, within carB at 280.970 kb on + strand, within carB at 280.970 kb on + strand, within carB at 281.011 kb on + strand, within carB at 281.011 kb on + strand, within carB at 281.040 kb on - strand, within carB at 281.218 kb on + strand, within carB at 281.450 kb on + strand, within carB at 281.483 kb on + strand, within carB at 281.498 kb on + strand, within carB at 281.549 kb on + strand, within carB at 281.549 kb on + strand, within carB at 281.550 kb on - strand, within carB at 281.550 kb on - strand, within carB at 281.550 kb on - strand, within carB at 281.599 kb on - strand, within carB at 281.768 kb on + strand at 281.769 kb on - strand at 281.775 kb on - strand at 281.778 kb on + strand at 281.778 kb on + strand at 281.779 kb on - strand at 281.779 kb on - strand at 281.779 kb on - strand at 281.779 kb on - strand at 281.806 kb on + strand at 281.807 kb on - strand at 281.897 kb on + strand at 281.897 kb on + strand at 281.898 kb on - strand at 281.898 kb on - strand at 281.898 kb on - strand at 281.898 kb on - strand at 281.898 kb on - strand at 281.898 kb on - strand at 281.979 kb on + strand at 281.982 kb on - strand at 281.982 kb on - strand at 281.987 kb on + strand at 281.988 kb on - strand at 281.988 kb on - strand at 281.988 kb on - strand at 282.009 kb on - strand at 282.009 kb on - strand at 282.018 kb on + strand at 282.018 kb on + strand at 282.018 kb on + strand at 282.019 kb on - strand at 282.019 kb on - strand at 282.032 kb on - strand at 282.048 kb on - strand at 282.055 kb on + strand at 282.056 kb on - strand at 282.056 kb on - strand at 282.160 kb on + strand, within carA at 282.178 kb on + strand, within carA at 282.179 kb on - strand, within carA at 282.203 kb on + strand, within carA at 282.203 kb on + strand, within carA at 282.204 kb on - strand, within carA at 282.204 kb on - strand, within carA at 282.532 kb on + strand, within carA at 282.576 kb on + strand, within carA at 282.661 kb on + strand, within carA at 282.661 kb on + strand, within carA at 282.661 kb on + strand, within carA at 282.661 kb on + strand, within carA at 282.661 kb on + strand, within carA at 282.662 kb on - strand, within carA at 282.662 kb on - strand, within carA at 282.663 kb on + strand, within carA at 282.664 kb on - strand, within carA at 282.664 kb on - strand, within carA at 282.664 kb on - strand, within carA at 282.770 kb on - strand, within carA at 282.818 kb on - strand, within carA at 282.818 kb on - strand, within carA at 282.884 kb on - strand, within carA at 282.942 kb on - strand, within carA at 282.971 kb on - strand, within carA at 282.996 kb on + strand, within carA
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101_WM remove 277,834 + caiE MCAODC_01440 0.71 -0.4 277,845 - caiE MCAODC_01440 0.73 -0.1 277,845 - caiE MCAODC_01440 0.73 +0.3 277,858 + caiE MCAODC_01440 0.75 -0.9 277,887 + caiE MCAODC_01440 0.80 -1.3 277,922 - caiE MCAODC_01440 0.86 -0.5 277,995 - -2.4 278,056 + -0.8 278,107 - +0.9 278,107 - -0.3 278,107 - -0.1 278,124 - +2.7 278,133 + -0.3 278,241 + caiF MCAODC_01445 0.30 +0.3 278,259 - caiF MCAODC_01445 0.35 -0.1 278,287 - caiF MCAODC_01445 0.42 +0.3 278,325 + caiF MCAODC_01445 0.51 -0.8 278,325 + caiF MCAODC_01445 0.51 +0.4 278,326 - caiF MCAODC_01445 0.52 -2.8 278,326 - caiF MCAODC_01445 0.52 +0.2 278,340 + caiF MCAODC_01445 0.55 +1.9 278,353 + caiF MCAODC_01445 0.58 -0.4 278,376 + caiF MCAODC_01445 0.64 -0.8 278,376 + caiF MCAODC_01445 0.64 -0.6 278,377 - caiF MCAODC_01445 0.64 -3.1 278,377 - caiF MCAODC_01445 0.64 +0.4 278,379 - caiF MCAODC_01445 0.65 +0.3 278,388 + caiF MCAODC_01445 0.67 -0.3 278,389 - caiF MCAODC_01445 0.67 -1.4 278,487 - +0.2 278,487 - +0.6 278,487 - -1.8 278,504 + +0.1 278,517 + +0.0 278,517 + +1.1 278,518 - +0.8 278,608 - MCAODC_01450 0.26 +0.9 278,610 + MCAODC_01450 0.26 +0.8 278,610 + MCAODC_01450 0.26 +0.6 278,610 + MCAODC_01450 0.26 -0.2 278,611 - MCAODC_01450 0.27 -0.6 278,629 + MCAODC_01450 0.35 +0.1 278,641 - MCAODC_01450 0.41 +0.3 278,641 - MCAODC_01450 0.41 +0.3 278,652 - MCAODC_01450 0.46 -1.1 278,652 - MCAODC_01450 0.46 -0.5 278,652 - MCAODC_01450 0.46 -0.3 278,652 - MCAODC_01450 0.46 -0.4 278,652 - MCAODC_01450 0.46 +0.3 278,652 - MCAODC_01450 0.46 +0.1 278,652 - MCAODC_01450 0.46 -0.2 278,652 - MCAODC_01450 0.46 -1.1 278,685 + MCAODC_01450 0.61 +0.6 278,686 - MCAODC_01450 0.61 +1.1 278,690 - MCAODC_01450 0.63 -0.1 278,726 - MCAODC_01450 0.79 -1.8 278,732 + MCAODC_01450 0.82 +0.1 278,733 - MCAODC_01450 0.83 +0.4 278,777 - -0.9 278,780 - -0.1 278,780 - -0.5 278,891 + -2.7 278,891 + -2.1 278,891 + -1.7 278,891 + -1.5 278,891 + -4.4 278,892 - -2.2 278,894 - -2.0 278,894 - -3.3 278,965 + -2.4 278,965 + -0.6 278,965 + -2.8 278,965 + +1.3 278,965 + +0.6 278,966 - +0.2 278,966 - -1.8 278,966 - -1.4 278,966 - -2.0 278,966 - -1.3 278,966 - -0.9 278,966 - -3.3 278,969 + -1.6 278,969 + -0.8 278,969 + -1.5 278,969 + -1.5 278,969 + -1.3 278,970 - +0.0 278,970 - -2.0 278,972 - -2.6 278,972 - -1.5 278,972 - -1.2 278,972 - -2.7 279,028 - -0.6 279,028 - -3.4 279,337 + carB MCAODC_01455 0.17 -2.1 279,338 - carB MCAODC_01455 0.17 -0.5 279,338 - carB MCAODC_01455 0.17 -2.0 279,340 + carB MCAODC_01455 0.17 +0.3 279,351 - carB MCAODC_01455 0.18 -1.3 279,363 + carB MCAODC_01455 0.18 -2.4 279,455 + carB MCAODC_01455 0.21 -0.8 279,487 + carB MCAODC_01455 0.22 -2.2 279,488 - carB MCAODC_01455 0.22 -0.3 279,576 + carB MCAODC_01455 0.25 -3.0 279,576 + carB MCAODC_01455 0.25 -2.6 279,576 + carB MCAODC_01455 0.25 -1.9 279,577 - carB MCAODC_01455 0.25 -1.8 279,577 - carB MCAODC_01455 0.25 -2.1 279,577 - carB MCAODC_01455 0.25 -0.6 279,577 - carB MCAODC_01455 0.25 +0.3 279,597 + carB MCAODC_01455 0.25 -1.4 279,597 + carB MCAODC_01455 0.25 +1.4 279,597 + carB MCAODC_01455 0.25 -1.5 279,598 - carB MCAODC_01455 0.25 -3.0 279,598 - carB MCAODC_01455 0.25 -2.9 279,605 - carB MCAODC_01455 0.26 -2.4 279,720 + carB MCAODC_01455 0.29 -1.7 279,720 + carB MCAODC_01455 0.29 -1.3 279,720 + carB MCAODC_01455 0.29 -0.1 279,815 - carB MCAODC_01455 0.32 -2.3 279,847 + carB MCAODC_01455 0.33 -2.6 279,847 + carB MCAODC_01455 0.33 +0.5 279,847 + carB MCAODC_01455 0.33 -0.1 279,848 - carB MCAODC_01455 0.33 -0.9 279,909 - carB MCAODC_01455 0.35 -2.1 279,996 - carB MCAODC_01455 0.38 -2.2 280,150 + carB MCAODC_01455 0.43 -1.5 280,151 - carB MCAODC_01455 0.43 -1.7 280,196 + carB MCAODC_01455 0.44 -2.7 280,203 - carB MCAODC_01455 0.44 -1.1 280,209 - carB MCAODC_01455 0.44 +0.9 280,252 - carB MCAODC_01455 0.46 -1.8 280,261 + carB MCAODC_01455 0.46 -0.8 280,360 + carB MCAODC_01455 0.49 -0.6 280,361 - carB MCAODC_01455 0.49 -4.4 280,361 - carB MCAODC_01455 0.49 -0.4 280,369 + carB MCAODC_01455 0.49 -1.7 280,369 + carB MCAODC_01455 0.49 -1.3 280,369 + carB MCAODC_01455 0.49 -0.6 280,369 + carB MCAODC_01455 0.49 -2.2 280,369 + carB MCAODC_01455 0.49 -1.4 280,369 + carB MCAODC_01455 0.49 -1.2 280,370 - carB MCAODC_01455 0.49 -3.1 280,370 - carB MCAODC_01455 0.49 -1.8 280,370 - carB MCAODC_01455 0.49 -1.7 280,370 - carB MCAODC_01455 0.49 -2.3 280,375 + carB MCAODC_01455 0.50 +0.7 280,376 - carB MCAODC_01455 0.50 -3.8 280,376 - carB MCAODC_01455 0.50 -1.1 280,376 - carB MCAODC_01455 0.50 -0.9 280,409 + carB MCAODC_01455 0.51 -1.7 280,409 + carB MCAODC_01455 0.51 -0.2 280,423 + carB MCAODC_01455 0.51 -0.9 280,424 - carB MCAODC_01455 0.51 +0.0 280,457 + carB MCAODC_01455 0.52 -3.0 280,476 + carB MCAODC_01455 0.53 -2.7 280,476 + carB MCAODC_01455 0.53 -1.4 280,477 - carB MCAODC_01455 0.53 -2.5 280,609 - carB MCAODC_01455 0.57 -1.8 280,609 - carB MCAODC_01455 0.57 -1.7 280,695 - carB MCAODC_01455 0.59 -1.2 280,695 - carB MCAODC_01455 0.59 -1.3 280,939 + carB MCAODC_01455 0.67 +0.3 280,940 - carB MCAODC_01455 0.67 -0.7 280,970 + carB MCAODC_01455 0.68 -1.3 280,970 + carB MCAODC_01455 0.68 -2.2 281,011 + carB MCAODC_01455 0.69 -1.3 281,011 + carB MCAODC_01455 0.69 -1.7 281,040 - carB MCAODC_01455 0.70 -1.6 281,218 + carB MCAODC_01455 0.76 -1.4 281,450 + carB MCAODC_01455 0.83 -1.0 281,483 + carB MCAODC_01455 0.84 -0.6 281,498 + carB MCAODC_01455 0.84 -1.6 281,549 + carB MCAODC_01455 0.86 -1.8 281,549 + carB MCAODC_01455 0.86 -2.1 281,550 - carB MCAODC_01455 0.86 -2.0 281,550 - carB MCAODC_01455 0.86 -2.7 281,550 - carB MCAODC_01455 0.86 -3.3 281,599 - carB MCAODC_01455 0.88 -0.9 281,768 + -1.6 281,769 - -2.8 281,775 - -2.6 281,778 + -0.1 281,778 + -0.3 281,779 - -1.9 281,779 - -2.4 281,779 - -0.6 281,779 - -1.4 281,806 + -2.7 281,807 - -1.5 281,897 + +0.2 281,897 + -0.8 281,898 - -2.0 281,898 - -1.3 281,898 - -0.7 281,898 - -1.8 281,898 - -1.4 281,898 - -1.2 281,979 + -1.2 281,982 - -1.1 281,982 - -1.9 281,987 + -1.8 281,988 - -1.4 281,988 - -0.6 281,988 - -0.2 282,009 - -3.3 282,009 - -0.6 282,018 + -3.6 282,018 + -0.4 282,018 + -0.3 282,019 - -0.6 282,019 - +0.4 282,032 - -0.0 282,048 - -0.7 282,055 + -1.2 282,056 - +0.5 282,056 - -1.0 282,160 + carA MCAODC_01460 0.12 -1.0 282,178 + carA MCAODC_01460 0.14 -0.8 282,179 - carA MCAODC_01460 0.14 -1.6 282,203 + carA MCAODC_01460 0.16 -2.1 282,203 + carA MCAODC_01460 0.16 -1.4 282,204 - carA MCAODC_01460 0.16 -1.9 282,204 - carA MCAODC_01460 0.16 -1.4 282,532 + carA MCAODC_01460 0.45 -3.3 282,576 + carA MCAODC_01460 0.49 -1.2 282,661 + carA MCAODC_01460 0.56 -0.3 282,661 + carA MCAODC_01460 0.56 -0.7 282,661 + carA MCAODC_01460 0.56 -0.5 282,661 + carA MCAODC_01460 0.56 -1.3 282,661 + carA MCAODC_01460 0.56 -1.2 282,662 - carA MCAODC_01460 0.56 -1.0 282,662 - carA MCAODC_01460 0.56 -1.8 282,663 + carA MCAODC_01460 0.56 -2.3 282,664 - carA MCAODC_01460 0.56 -1.8 282,664 - carA MCAODC_01460 0.56 -0.3 282,664 - carA MCAODC_01460 0.56 -1.7 282,770 - carA MCAODC_01460 0.66 -1.3 282,818 - carA MCAODC_01460 0.70 -2.6 282,818 - carA MCAODC_01460 0.70 -0.5 282,884 - carA MCAODC_01460 0.75 -1.7 282,942 - carA MCAODC_01460 0.81 -1.8 282,971 - carA MCAODC_01460 0.83 -1.5 282,996 + carA MCAODC_01460 0.85 -1.0
Or see this region's nucleotide sequence