Experiment: Bas06
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_19815 and hchA are separated by 591 nucleotides hchA and hprS are separated by 107 nucleotides
MCAODC_19815: MCAODC_19815 - Outer membrane protein, at 788,416 to 788,991
_19815
MCAODC_19820: hchA - protein deglycase HchA, at 789,583 to 790,434
hchA
MCAODC_19825: hprS - two-component system sensor histidine kinase HprS, at 790,542 to 791,900
hprS
Position (kb) 789
790
791 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 788.584 kb on - strand, within MCAODC_19815 at 788.609 kb on + strand, within MCAODC_19815 at 788.610 kb on - strand, within MCAODC_19815 at 788.616 kb on + strand, within MCAODC_19815 at 788.616 kb on + strand, within MCAODC_19815 at 788.616 kb on + strand, within MCAODC_19815 at 788.617 kb on - strand, within MCAODC_19815 at 788.617 kb on - strand, within MCAODC_19815 at 788.617 kb on - strand, within MCAODC_19815 at 788.620 kb on + strand, within MCAODC_19815 at 788.751 kb on + strand, within MCAODC_19815 at 788.751 kb on + strand, within MCAODC_19815 at 788.752 kb on - strand, within MCAODC_19815 at 788.758 kb on - strand, within MCAODC_19815 at 788.766 kb on - strand, within MCAODC_19815 at 788.784 kb on + strand, within MCAODC_19815 at 788.837 kb on - strand, within MCAODC_19815 at 788.850 kb on + strand, within MCAODC_19815 at 788.851 kb on - strand, within MCAODC_19815 at 788.860 kb on + strand, within MCAODC_19815 at 788.884 kb on + strand, within MCAODC_19815 at 788.884 kb on + strand, within MCAODC_19815 at 788.884 kb on + strand, within MCAODC_19815 at 788.893 kb on + strand, within MCAODC_19815 at 788.930 kb on - strand, within MCAODC_19815 at 789.016 kb on - strand at 789.155 kb on - strand at 789.316 kb on - strand at 789.367 kb on + strand at 789.458 kb on + strand at 789.459 kb on - strand at 789.544 kb on + strand at 789.560 kb on + strand at 789.670 kb on - strand, within hchA at 789.830 kb on - strand, within hchA at 789.830 kb on - strand, within hchA at 789.898 kb on + strand, within hchA at 789.898 kb on + strand, within hchA at 789.906 kb on + strand, within hchA at 789.952 kb on - strand, within hchA at 790.056 kb on + strand, within hchA at 790.064 kb on + strand, within hchA at 790.082 kb on + strand, within hchA at 790.082 kb on + strand, within hchA at 790.083 kb on - strand, within hchA at 790.083 kb on - strand, within hchA at 790.193 kb on - strand, within hchA at 790.248 kb on + strand, within hchA at 790.248 kb on + strand, within hchA at 790.270 kb on + strand, within hchA at 790.271 kb on - strand, within hchA at 790.334 kb on + strand, within hchA at 790.334 kb on + strand, within hchA at 790.334 kb on + strand, within hchA at 790.338 kb on + strand, within hchA at 790.338 kb on + strand, within hchA at 790.339 kb on - strand, within hchA at 790.442 kb on + strand at 790.442 kb on + strand at 790.455 kb on - strand at 790.484 kb on + strand at 790.521 kb on - strand at 790.578 kb on - strand at 790.597 kb on + strand at 790.597 kb on + strand at 790.598 kb on - strand at 790.602 kb on - strand at 790.602 kb on - strand at 790.680 kb on - strand, within hprS at 790.755 kb on - strand, within hprS at 791.159 kb on + strand, within hprS at 791.393 kb on + strand, within hprS at 791.413 kb on - strand, within hprS
Per-strain Table
Position Strand Gene LocusTag Fraction Bas06 remove 788,584 - MCAODC_19815 0.29 -0.2 788,609 + MCAODC_19815 0.34 +0.2 788,610 - MCAODC_19815 0.34 +0.5 788,616 + MCAODC_19815 0.35 -0.1 788,616 + MCAODC_19815 0.35 -0.5 788,616 + MCAODC_19815 0.35 -0.2 788,617 - MCAODC_19815 0.35 +0.3 788,617 - MCAODC_19815 0.35 -1.5 788,617 - MCAODC_19815 0.35 -2.6 788,620 + MCAODC_19815 0.35 -1.7 788,751 + MCAODC_19815 0.58 -1.4 788,751 + MCAODC_19815 0.58 +1.2 788,752 - MCAODC_19815 0.58 -0.5 788,758 - MCAODC_19815 0.59 -1.1 788,766 - MCAODC_19815 0.61 +1.6 788,784 + MCAODC_19815 0.64 -1.5 788,837 - MCAODC_19815 0.73 -1.0 788,850 + MCAODC_19815 0.75 -1.4 788,851 - MCAODC_19815 0.76 -1.0 788,860 + MCAODC_19815 0.77 -0.3 788,884 + MCAODC_19815 0.81 -1.7 788,884 + MCAODC_19815 0.81 +1.5 788,884 + MCAODC_19815 0.81 +1.9 788,893 + MCAODC_19815 0.83 -1.2 788,930 - MCAODC_19815 0.89 +1.8 789,016 - -0.4 789,155 - -2.5 789,316 - +0.1 789,367 + +1.2 789,458 + +1.8 789,459 - +3.2 789,544 + -0.9 789,560 + +0.7 789,670 - hchA MCAODC_19820 0.10 +0.0 789,830 - hchA MCAODC_19820 0.29 +1.6 789,830 - hchA MCAODC_19820 0.29 +1.5 789,898 + hchA MCAODC_19820 0.37 +1.0 789,898 + hchA MCAODC_19820 0.37 +1.9 789,906 + hchA MCAODC_19820 0.38 -0.7 789,952 - hchA MCAODC_19820 0.43 +1.5 790,056 + hchA MCAODC_19820 0.56 +0.5 790,064 + hchA MCAODC_19820 0.56 -2.0 790,082 + hchA MCAODC_19820 0.59 -0.3 790,082 + hchA MCAODC_19820 0.59 -1.4 790,083 - hchA MCAODC_19820 0.59 -0.4 790,083 - hchA MCAODC_19820 0.59 +2.0 790,193 - hchA MCAODC_19820 0.72 +0.1 790,248 + hchA MCAODC_19820 0.78 +1.8 790,248 + hchA MCAODC_19820 0.78 -2.6 790,270 + hchA MCAODC_19820 0.81 +1.4 790,271 - hchA MCAODC_19820 0.81 +1.9 790,334 + hchA MCAODC_19820 0.88 +0.2 790,334 + hchA MCAODC_19820 0.88 +1.5 790,334 + hchA MCAODC_19820 0.88 +0.7 790,338 + hchA MCAODC_19820 0.89 -0.0 790,338 + hchA MCAODC_19820 0.89 -0.0 790,339 - hchA MCAODC_19820 0.89 -1.1 790,442 + -1.0 790,442 + +0.1 790,455 - -0.7 790,484 + -1.0 790,521 - +2.3 790,578 - +0.2 790,597 + -1.1 790,597 + +0.1 790,598 - +0.4 790,602 - +1.2 790,602 - +0.2 790,680 - hprS MCAODC_19825 0.10 +0.0 790,755 - hprS MCAODC_19825 0.16 +0.0 791,159 + hprS MCAODC_19825 0.45 -1.2 791,393 + hprS MCAODC_19825 0.63 -0.7 791,413 - hprS MCAODC_19825 0.64 +0.7
Or see this region's nucleotide sequence