Experiment: Ying_AminoAcid20 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS21715 and ABIE41_RS21720 are separated by 95 nucleotides ABIE41_RS21720 and ABIE41_RS21725 are separated by 168 nucleotides ABIE41_RS21725 and ABIE41_RS21730 are separated by 121 nucleotides
ABIE41_RS21715: ABIE41_RS21715 - NADP-dependent malic enzyme, at 4,461,313 to 4,463,607
_RS21715
ABIE41_RS21720: ABIE41_RS21720 - alpha/beta fold hydrolase, at 4,463,703 to 4,464,836
_RS21720
ABIE41_RS21725: ABIE41_RS21725 - BLUF domain-containing protein, at 4,465,005 to 4,465,517
_RS21725
ABIE41_RS21730: ABIE41_RS21730 - peptide ABC transporter substrate-binding protein, at 4,465,639 to 4,467,234
_RS21730
Position (kb) 4463
4464
4465 Strain fitness (log2 ratio) -2
-1
0
1 at 4462.849 kb on + strand, within ABIE41_RS21715 at 4462.849 kb on + strand, within ABIE41_RS21715 at 4462.849 kb on + strand, within ABIE41_RS21715 at 4462.849 kb on + strand, within ABIE41_RS21715 at 4462.850 kb on - strand, within ABIE41_RS21715 at 4462.850 kb on - strand, within ABIE41_RS21715 at 4462.850 kb on - strand, within ABIE41_RS21715 at 4462.861 kb on + strand, within ABIE41_RS21715 at 4462.861 kb on + strand, within ABIE41_RS21715 at 4462.862 kb on - strand, within ABIE41_RS21715 at 4462.862 kb on - strand, within ABIE41_RS21715 at 4463.244 kb on + strand, within ABIE41_RS21715 at 4464.378 kb on + strand, within ABIE41_RS21720 at 4464.378 kb on + strand, within ABIE41_RS21720 at 4464.378 kb on + strand, within ABIE41_RS21720 at 4464.378 kb on + strand, within ABIE41_RS21720 at 4464.379 kb on - strand, within ABIE41_RS21720 at 4464.379 kb on - strand, within ABIE41_RS21720 at 4465.022 kb on - strand at 4465.023 kb on + strand at 4465.408 kb on + strand, within ABIE41_RS21725 at 4465.581 kb on + strand at 4465.581 kb on + strand at 4465.582 kb on - strand at 4465.811 kb on - strand, within ABIE41_RS21730 at 4465.811 kb on - strand, within ABIE41_RS21730 at 4465.811 kb on - strand, within ABIE41_RS21730 at 4465.830 kb on + strand, within ABIE41_RS21730 at 4465.830 kb on + strand, within ABIE41_RS21730 at 4465.831 kb on - strand, within ABIE41_RS21730
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 2 remove 4,462,849 + ABIE41_RS21715 0.67 -1.0 4,462,849 + ABIE41_RS21715 0.67 -1.1 4,462,849 + ABIE41_RS21715 0.67 +1.2 4,462,849 + ABIE41_RS21715 0.67 +0.0 4,462,850 - ABIE41_RS21715 0.67 -1.3 4,462,850 - ABIE41_RS21715 0.67 -0.9 4,462,850 - ABIE41_RS21715 0.67 +0.1 4,462,861 + ABIE41_RS21715 0.67 -0.8 4,462,861 + ABIE41_RS21715 0.67 -0.6 4,462,862 - ABIE41_RS21715 0.67 -0.6 4,462,862 - ABIE41_RS21715 0.67 +1.3 4,463,244 + ABIE41_RS21715 0.84 -2.1 4,464,378 + ABIE41_RS21720 0.60 -0.1 4,464,378 + ABIE41_RS21720 0.60 +0.1 4,464,378 + ABIE41_RS21720 0.60 +1.5 4,464,378 + ABIE41_RS21720 0.60 +1.7 4,464,379 - ABIE41_RS21720 0.60 -2.0 4,464,379 - ABIE41_RS21720 0.60 +0.1 4,465,022 - -0.3 4,465,023 + +0.1 4,465,408 + ABIE41_RS21725 0.79 +1.0 4,465,581 + +0.0 4,465,581 + -1.1 4,465,582 - +1.4 4,465,811 - ABIE41_RS21730 0.11 +0.2 4,465,811 - ABIE41_RS21730 0.11 +0.8 4,465,811 - ABIE41_RS21730 0.11 -0.4 4,465,830 + ABIE41_RS21730 0.12 -0.2 4,465,830 + ABIE41_RS21730 0.12 -0.4 4,465,831 - ABIE41_RS21730 0.12 +0.6
Or see this region's nucleotide sequence