Strain Fitness in Bosea sp. OAE506 around ABIE41_RS18820

Experiment: Ying_AminoAcid20 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 2
3,876,201	+		ABIE41_RS18815	0.53	-0.6
3,876,202	-		ABIE41_RS18815	0.53	-0.0
3,876,240	+		ABIE41_RS18815	0.55	-2.1
3,876,240	+		ABIE41_RS18815	0.55	-0.1
3,876,240	+		ABIE41_RS18815	0.55	-0.0
3,876,240	+		ABIE41_RS18815	0.55	+0.4
3,876,240	+		ABIE41_RS18815	0.55	-0.1
3,876,240	+		ABIE41_RS18815	0.55	-1.0
3,876,241	-		ABIE41_RS18815	0.55	-1.9
3,876,241	-		ABIE41_RS18815	0.55	+0.9
3,876,242	+		ABIE41_RS18815	0.55	-0.6
3,876,242	+		ABIE41_RS18815	0.55	+0.2
3,876,242	+		ABIE41_RS18815	0.55	+0.8
3,876,242	+		ABIE41_RS18815	0.55	-0.9
3,876,243	-		ABIE41_RS18815	0.56	+0.4
3,876,243	-		ABIE41_RS18815	0.56	-0.3
3,876,243	-		ABIE41_RS18815	0.56	+0.1
3,876,243	-		ABIE41_RS18815	0.56	+0.0
3,876,243	-		ABIE41_RS18815	0.56	-1.3
3,876,683	+		ABIE41_RS18815	0.83	+0.0
3,876,683	+		ABIE41_RS18815	0.83	-0.2
3,876,683	+		ABIE41_RS18815	0.83	-1.4
3,876,683	+		ABIE41_RS18815	0.83	-1.4
3,876,684	-		ABIE41_RS18815	0.83	+0.1
3,876,684	-		ABIE41_RS18815	0.83	+0.2
3,876,831	+				-0.0
3,876,831	+				+0.6
3,876,832	-				-1.0
3,876,866	+				+0.3
3,876,866	+				+0.4
3,876,866	+				-0.3
3,876,866	+				+0.5
3,876,867	-				+0.8
3,876,867	-				-0.3
3,876,900	+				+0.7
3,876,900	+				-1.6
3,876,901	-				+0.8
3,876,901	-				-0.4
3,877,060	+				-1.4
3,877,060	+				-0.1
3,877,237	+		ABIE41_RS18820	0.17	-0.0
3,877,238	-		ABIE41_RS18820	0.17	-0.2
3,877,238	-		ABIE41_RS18820	0.17	+0.0
3,877,251	-		ABIE41_RS18820	0.19	+0.2
3,877,263	-		ABIE41_RS18820	0.20	-0.2
3,877,352	-		ABIE41_RS18820	0.31	+0.4
3,877,356	+		ABIE41_RS18820	0.31	-0.0
3,877,356	+		ABIE41_RS18820	0.31	-1.3
3,877,357	-		ABIE41_RS18820	0.32	+0.2
3,877,357	-		ABIE41_RS18820	0.32	+0.3
3,877,483	+		ABIE41_RS18820	0.47	-1.2
3,877,483	+		ABIE41_RS18820	0.47	-0.6
3,877,483	+		ABIE41_RS18820	0.47	+0.6
3,877,483	+		ABIE41_RS18820	0.47	-0.2
3,877,483	+		ABIE41_RS18820	0.47	+0.8
3,877,484	-		ABIE41_RS18820	0.47	-0.5
3,877,484	-		ABIE41_RS18820	0.47	-1.3
3,877,484	-		ABIE41_RS18820	0.47	+1.2
3,877,484	-		ABIE41_RS18820	0.47	-1.0
3,877,484	-		ABIE41_RS18820	0.47	-1.7
3,877,484	-		ABIE41_RS18820	0.47	+0.7
3,877,484	-		ABIE41_RS18820	0.47	+1.1
3,877,484	-		ABIE41_RS18820	0.47	-0.9
3,877,484	-		ABIE41_RS18820	0.47	-0.3
3,877,485	+		ABIE41_RS18820	0.47	+1.7
3,877,485	+		ABIE41_RS18820	0.47	+0.1
3,877,485	+		ABIE41_RS18820	0.47	-1.3
3,877,613	+		ABIE41_RS18820	0.62	-0.1
3,877,613	+		ABIE41_RS18820	0.62	-0.5
3,877,613	+		ABIE41_RS18820	0.62	+1.1
3,877,614	-		ABIE41_RS18820	0.62	+0.2
3,877,614	-		ABIE41_RS18820	0.62	+0.4
3,877,614	-		ABIE41_RS18820	0.62	+0.2
3,877,643	+		ABIE41_RS18820	0.66	+0.2
3,877,643	+		ABIE41_RS18820	0.66	+0.6
3,877,643	+		ABIE41_RS18820	0.66	+0.7
3,877,643	+		ABIE41_RS18820	0.66	+1.0
3,877,643	+		ABIE41_RS18820	0.66	-0.2
3,877,644	-		ABIE41_RS18820	0.66	+1.4
3,877,644	-		ABIE41_RS18820	0.66	-0.2
3,877,644	-		ABIE41_RS18820	0.66	+2.0
3,877,742	-		ABIE41_RS18820	0.78	-0.8
3,877,742	-		ABIE41_RS18820	0.78	-0.2
3,877,754	+		ABIE41_RS18820	0.79	-0.2
3,877,754	+		ABIE41_RS18820	0.79	+0.8
3,877,911	+				+0.6
3,877,912	-				-0.2
3,877,930	+				-0.4
3,877,931	-				-0.1
3,877,931	-				-0.7
3,877,931	-				-0.2
3,877,931	-				+0.0
3,877,931	-				-0.6
3,878,012	+		ABIE41_RS18825	0.21	-2.3
3,878,012	+		ABIE41_RS18825	0.21	+0.2
3,878,013	-		ABIE41_RS18825	0.21	-0.9
3,878,054	+		ABIE41_RS18825	0.30	-2.2
3,878,054	+		ABIE41_RS18825	0.30	+0.1
3,878,054	+		ABIE41_RS18825	0.30	-0.6
3,878,054	+		ABIE41_RS18825	0.30	-1.7
3,878,054	+		ABIE41_RS18825	0.30	+0.5
3,878,055	-		ABIE41_RS18825	0.31	+0.0
3,878,055	-		ABIE41_RS18825	0.31	-0.1
3,878,134	-		ABIE41_RS18825	0.48	-2.3
3,878,188	+		ABIE41_RS18825	0.60	+1.7
3,878,189	-		ABIE41_RS18825	0.61	-0.1
3,878,329	+				-0.0
3,878,329	+				-1.3
3,878,329	+				-0.4
3,878,330	-				+0.2
3,878,330	-				+0.7
3,878,330	-				+1.3
3,878,602	+		ABIE41_RS18830	0.29	-0.6
3,878,602	+		ABIE41_RS18830	0.29	+0.1
3,878,602	+		ABIE41_RS18830	0.29	-1.1
3,878,603	-		ABIE41_RS18830	0.29	+0.1
3,878,603	-		ABIE41_RS18830	0.29	+0.0
3,878,605	-		ABIE41_RS18830	0.30	+0.3
3,878,825	+		ABIE41_RS18830	0.66	+0.8
3,878,826	-		ABIE41_RS18830	0.66	+0.1
3,878,826	-		ABIE41_RS18830	0.66	-1.4
3,878,826	-		ABIE41_RS18830	0.66	-0.1
3,878,826	-		ABIE41_RS18830	0.66	-0.3