Strain Fitness in Bosea sp. OAE506 around ABIE41_RS12320

Experiment: Ying_AminoAcid20 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 2
2,520,176	+		ABIE41_RS12310	0.86	+0.1
2,520,177	-		ABIE41_RS12310	0.86	-0.8
2,520,322	+				-1.3
2,520,404	+		ABIE41_RS12315	0.18	-0.2
2,520,405	-		ABIE41_RS12315	0.18	-0.2
2,520,405	-		ABIE41_RS12315	0.18	-0.1
2,520,653	+		ABIE41_RS12315	0.82	+0.2
2,520,653	+		ABIE41_RS12315	0.82	-1.9
2,520,653	+		ABIE41_RS12315	0.82	-0.2
2,520,654	-		ABIE41_RS12315	0.82	-0.4
2,520,654	-		ABIE41_RS12315	0.82	-0.3
2,520,660	+		ABIE41_RS12315	0.83	+0.0
2,520,669	-		ABIE41_RS12315	0.86	-1.2
2,520,669	-		ABIE41_RS12315	0.86	-1.2
2,520,832	+				+0.0
2,520,832	+				-0.2
2,520,833	-				-0.4
2,520,834	+				-1.0
2,520,834	+				+1.6
2,520,834	+				+0.3
2,520,835	-				+0.3
2,521,249	+		ABIE41_RS12320	0.62	-0.3
2,521,249	+		ABIE41_RS12320	0.62	+0.9
2,521,249	+		ABIE41_RS12320	0.62	-3.2
2,521,250	-		ABIE41_RS12320	0.62	-0.1
2,521,300	+		ABIE41_RS12320	0.71	-0.8
2,521,300	+		ABIE41_RS12320	0.71	+0.6
2,521,300	+		ABIE41_RS12320	0.71	-1.2
2,521,301	-		ABIE41_RS12320	0.71	+0.0
2,521,301	-		ABIE41_RS12320	0.71	-0.6
2,521,301	-		ABIE41_RS12320	0.71	+1.4
2,521,301	-		ABIE41_RS12320	0.71	-0.6
2,521,358	-		ABIE41_RS12320	0.81	-1.3
2,521,358	-		ABIE41_RS12320	0.81	-0.1
2,521,358	-		ABIE41_RS12320	0.81	-0.2
2,521,358	-		ABIE41_RS12320	0.81	-0.8
2,521,358	-		ABIE41_RS12320	0.81	+0.2
2,521,700	+		ABIE41_RS12325	0.14	-0.2
2,521,739	+		ABIE41_RS12325	0.18	-0.4
2,521,739	+		ABIE41_RS12325	0.18	-2.3
2,521,740	-		ABIE41_RS12325	0.18	-0.2
2,521,740	-		ABIE41_RS12325	0.18	-0.9
2,521,740	-		ABIE41_RS12325	0.18	-0.8
2,521,740	-		ABIE41_RS12325	0.18	-2.2
2,522,003	+		ABIE41_RS12325	0.47	+0.5
2,522,234	+		ABIE41_RS12325	0.72	+0.1
2,522,346	+		ABIE41_RS12325	0.84	-0.1
2,522,347	-		ABIE41_RS12325	0.84	+0.3
2,522,347	-		ABIE41_RS12325	0.84	-0.7