Experiment: Ying_AminoAcid20 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS07790 and ABIE41_RS07795 are separated by 3 nucleotides ABIE41_RS07795 and ABIE41_RS07800 are separated by 115 nucleotides
ABIE41_RS07790: ABIE41_RS07790 - DUF808 domain-containing protein, at 1,599,978 to 1,600,934
_RS07790
ABIE41_RS07795: ABIE41_RS07795 - nitroreductase, at 1,600,938 to 1,601,618
_RS07795
ABIE41_RS07800: ABIE41_RS07800 - lysine--tRNA ligase, at 1,601,734 to 1,603,443
_RS07800
Position (kb) 1600
1601
1602 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1600.031 kb on - strand at 1600.287 kb on + strand, within ABIE41_RS07790 at 1600.287 kb on + strand, within ABIE41_RS07790 at 1600.287 kb on + strand, within ABIE41_RS07790 at 1600.288 kb on - strand, within ABIE41_RS07790 at 1600.288 kb on - strand, within ABIE41_RS07790 at 1600.288 kb on - strand, within ABIE41_RS07790 at 1600.296 kb on + strand, within ABIE41_RS07790 at 1600.296 kb on + strand, within ABIE41_RS07790 at 1600.542 kb on + strand, within ABIE41_RS07790 at 1600.542 kb on + strand, within ABIE41_RS07790 at 1600.542 kb on + strand, within ABIE41_RS07790 at 1600.543 kb on - strand, within ABIE41_RS07790 at 1600.543 kb on - strand, within ABIE41_RS07790 at 1600.543 kb on - strand, within ABIE41_RS07790 at 1600.543 kb on - strand, within ABIE41_RS07790 at 1600.543 kb on - strand, within ABIE41_RS07790 at 1600.544 kb on - strand, within ABIE41_RS07790 at 1600.893 kb on + strand at 1600.894 kb on - strand at 1600.986 kb on + strand at 1601.022 kb on + strand, within ABIE41_RS07795 at 1601.022 kb on + strand, within ABIE41_RS07795 at 1601.023 kb on - strand, within ABIE41_RS07795 at 1601.023 kb on - strand, within ABIE41_RS07795 at 1601.023 kb on - strand, within ABIE41_RS07795 at 1601.023 kb on - strand, within ABIE41_RS07795 at 1601.170 kb on - strand, within ABIE41_RS07795 at 1601.308 kb on + strand, within ABIE41_RS07795 at 1601.344 kb on + strand, within ABIE41_RS07795 at 1601.345 kb on - strand, within ABIE41_RS07795 at 1601.345 kb on - strand, within ABIE41_RS07795 at 1601.368 kb on + strand, within ABIE41_RS07795 at 1601.371 kb on + strand, within ABIE41_RS07795 at 1601.371 kb on + strand, within ABIE41_RS07795 at 1601.377 kb on + strand, within ABIE41_RS07795 at 1601.378 kb on - strand, within ABIE41_RS07795 at 1601.378 kb on - strand, within ABIE41_RS07795 at 1601.527 kb on + strand, within ABIE41_RS07795
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 2 remove 1,600,031 - -2.7 1,600,287 + ABIE41_RS07790 0.32 +0.6 1,600,287 + ABIE41_RS07790 0.32 +0.1 1,600,287 + ABIE41_RS07790 0.32 +1.9 1,600,288 - ABIE41_RS07790 0.32 +0.0 1,600,288 - ABIE41_RS07790 0.32 +0.3 1,600,288 - ABIE41_RS07790 0.32 -0.1 1,600,296 + ABIE41_RS07790 0.33 -2.1 1,600,296 + ABIE41_RS07790 0.33 +1.4 1,600,542 + ABIE41_RS07790 0.59 -0.4 1,600,542 + ABIE41_RS07790 0.59 -2.5 1,600,542 + ABIE41_RS07790 0.59 +0.1 1,600,543 - ABIE41_RS07790 0.59 +1.8 1,600,543 - ABIE41_RS07790 0.59 -0.3 1,600,543 - ABIE41_RS07790 0.59 -0.7 1,600,543 - ABIE41_RS07790 0.59 +0.4 1,600,543 - ABIE41_RS07790 0.59 +0.5 1,600,544 - ABIE41_RS07790 0.59 +0.1 1,600,893 + -0.2 1,600,894 - +0.2 1,600,986 + +0.1 1,601,022 + ABIE41_RS07795 0.12 +0.5 1,601,022 + ABIE41_RS07795 0.12 -0.2 1,601,023 - ABIE41_RS07795 0.12 -1.0 1,601,023 - ABIE41_RS07795 0.12 +0.0 1,601,023 - ABIE41_RS07795 0.12 +0.5 1,601,023 - ABIE41_RS07795 0.12 -0.4 1,601,170 - ABIE41_RS07795 0.34 -0.4 1,601,308 + ABIE41_RS07795 0.54 -0.1 1,601,344 + ABIE41_RS07795 0.60 +1.2 1,601,345 - ABIE41_RS07795 0.60 -0.6 1,601,345 - ABIE41_RS07795 0.60 +0.6 1,601,368 + ABIE41_RS07795 0.63 -1.0 1,601,371 + ABIE41_RS07795 0.64 +0.5 1,601,371 + ABIE41_RS07795 0.64 -0.0 1,601,377 + ABIE41_RS07795 0.64 -0.5 1,601,378 - ABIE41_RS07795 0.65 -0.3 1,601,378 - ABIE41_RS07795 0.65 +0.4 1,601,527 + ABIE41_RS07795 0.86 +1.7
Or see this region's nucleotide sequence