Strain Fitness in Bosea sp. OAE506 around ABIE41_RS07400

Experiment: Ying_AminoAcid20 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 2
1,518,595	+		ABIE41_RS07390	0.89	+0.3
1,518,595	+		ABIE41_RS07390	0.89	+0.0
1,518,604	+				+0.6
1,518,682	+		ABIE41_RS07395	0.10	+1.4
1,518,682	+		ABIE41_RS07395	0.10	+0.4
1,518,683	-		ABIE41_RS07395	0.10	-1.1
1,518,724	+		ABIE41_RS07395	0.16	-0.6
1,518,724	+		ABIE41_RS07395	0.16	+0.8
1,518,724	+		ABIE41_RS07395	0.16	-0.4
1,518,725	-		ABIE41_RS07395	0.16	+1.3
1,518,727	+		ABIE41_RS07395	0.17	+0.3
1,518,727	+		ABIE41_RS07395	0.17	+0.9
1,518,727	+		ABIE41_RS07395	0.17	+0.1
1,518,727	+		ABIE41_RS07395	0.17	-0.5
1,518,728	-		ABIE41_RS07395	0.17	+0.4
1,518,743	+		ABIE41_RS07395	0.19	-0.0
1,518,887	-		ABIE41_RS07395	0.40	-0.3
1,518,887	-		ABIE41_RS07395	0.40	-0.4
1,518,887	-		ABIE41_RS07395	0.40	-0.9
1,518,969	+		ABIE41_RS07395	0.51	+0.0
1,518,970	-		ABIE41_RS07395	0.51	-0.2
1,518,970	-		ABIE41_RS07395	0.51	-0.4
1,518,992	+		ABIE41_RS07395	0.55	-0.8
1,518,992	+		ABIE41_RS07395	0.55	+0.0
1,518,992	+		ABIE41_RS07395	0.55	-0.0
1,518,992	+		ABIE41_RS07395	0.55	+1.7
1,518,992	+		ABIE41_RS07395	0.55	-0.1
1,518,992	+		ABIE41_RS07395	0.55	-0.0
1,518,993	-		ABIE41_RS07395	0.55	+0.2
1,518,993	-		ABIE41_RS07395	0.55	-0.5
1,518,993	-		ABIE41_RS07395	0.55	+0.1
1,518,993	-		ABIE41_RS07395	0.55	-0.7
1,518,993	-		ABIE41_RS07395	0.55	-0.6
1,518,996	+		ABIE41_RS07395	0.55	-0.4
1,518,996	+		ABIE41_RS07395	0.55	+3.0
1,518,996	+		ABIE41_RS07395	0.55	+0.8
1,518,996	+		ABIE41_RS07395	0.55	-0.8
1,518,996	+		ABIE41_RS07395	0.55	+1.7
1,518,997	-		ABIE41_RS07395	0.55	+0.3
1,518,997	-		ABIE41_RS07395	0.55	-0.3
1,518,997	-		ABIE41_RS07395	0.55	+0.2
1,518,997	-		ABIE41_RS07395	0.55	+0.2
1,518,997	-		ABIE41_RS07395	0.55	+0.3
1,518,998	+		ABIE41_RS07395	0.55	-1.8
1,518,998	+		ABIE41_RS07395	0.55	-0.2
1,518,998	+		ABIE41_RS07395	0.55	-0.9
1,518,999	-		ABIE41_RS07395	0.56	+0.1
1,518,999	-		ABIE41_RS07395	0.56	-1.3
1,519,043	+		ABIE41_RS07395	0.62	-0.4
1,519,065	+		ABIE41_RS07395	0.65	+0.5
1,519,066	-		ABIE41_RS07395	0.65	+0.1
1,519,066	-		ABIE41_RS07395	0.65	+0.1
1,519,066	-		ABIE41_RS07395	0.65	-0.1
1,519,066	-		ABIE41_RS07395	0.65	+0.1
1,519,066	-		ABIE41_RS07395	0.65	+1.7
1,519,088	+		ABIE41_RS07395	0.68	+1.7
1,519,088	+		ABIE41_RS07395	0.68	-0.5
1,519,088	+		ABIE41_RS07395	0.68	+0.1
1,519,089	-		ABIE41_RS07395	0.69	+1.2
1,519,092	+		ABIE41_RS07395	0.69	-0.5
1,519,092	+		ABIE41_RS07395	0.69	-0.0
1,519,092	+		ABIE41_RS07395	0.69	+0.4
1,519,092	+		ABIE41_RS07395	0.69	-0.3
1,519,092	+		ABIE41_RS07395	0.69	-0.2
1,519,092	+		ABIE41_RS07395	0.69	+0.4
1,519,092	+		ABIE41_RS07395	0.69	+0.7
1,519,093	-		ABIE41_RS07395	0.69	+1.1
1,519,093	-		ABIE41_RS07395	0.69	+0.3
1,519,201	+		ABIE41_RS07395	0.85	-0.1
1,519,201	+		ABIE41_RS07395	0.85	+0.0
1,519,201	+		ABIE41_RS07395	0.85	-0.0
1,519,201	+		ABIE41_RS07395	0.85	+0.2
1,519,202	-		ABIE41_RS07395	0.85	+0.5
1,519,305	+				-0.4
1,519,305	+				+0.2
1,519,306	-				-0.1
1,519,306	-				-0.3
1,519,353	+		ABIE41_RS07400	0.10	-0.1
1,519,354	-		ABIE41_RS07400	0.10	-0.6
1,519,355	+		ABIE41_RS07400	0.11	-0.2
1,519,369	-		ABIE41_RS07400	0.14	-0.2
1,519,453	+		ABIE41_RS07400	0.35	-0.8
1,519,454	-		ABIE41_RS07400	0.35	+0.6
1,519,469	-		ABIE41_RS07400	0.39	+0.8
1,519,469	-		ABIE41_RS07400	0.39	-1.3
1,519,469	-		ABIE41_RS07400	0.39	-3.3
1,519,500	+		ABIE41_RS07400	0.47	+0.2
1,519,500	+		ABIE41_RS07400	0.47	-0.3
1,519,500	+		ABIE41_RS07400	0.47	+0.4
1,519,500	+		ABIE41_RS07400	0.47	+0.7
1,519,501	-		ABIE41_RS07400	0.47	-0.1
1,519,501	-		ABIE41_RS07400	0.47	+1.0
1,519,534	+		ABIE41_RS07400	0.55	+1.2
1,519,534	+		ABIE41_RS07400	0.55	-0.3
1,519,535	-		ABIE41_RS07400	0.55	+0.2
1,519,578	-		ABIE41_RS07400	0.66	-0.4
1,519,578	-		ABIE41_RS07400	0.66	+1.7
1,519,608	+		ABIE41_RS07400	0.74	-3.0
1,519,608	+		ABIE41_RS07400	0.74	-0.3
1,519,608	+		ABIE41_RS07400	0.74	-0.1
1,519,609	-		ABIE41_RS07400	0.74	-0.2
1,519,609	-		ABIE41_RS07400	0.74	-0.3
1,519,640	-		ABIE41_RS07400	0.82	+0.2
1,519,640	-		ABIE41_RS07400	0.82	+0.8
1,519,660	-		ABIE41_RS07400	0.87	+0.1
1,519,711	+				-0.6
1,519,711	+				-0.6
1,519,712	-				+0.2
1,519,736	+				-0.6
1,519,736	+				-1.3
1,519,737	-				-0.4
1,519,737	-				-0.8
1,519,848	+				-2.0
1,519,935	+		ABIE41_RS07405	0.48	-1.1
1,520,048	+				-0.1
1,520,084	-				-0.2
1,520,084	-				-0.8
1,520,333	-				-1.0
1,520,440	+				-0.0
1,520,441	-				+0.5
1,520,441	-				+0.2
1,520,441	-				+2.1
1,520,462	+				-0.1
1,520,462	+				+0.3
1,520,462	+				-1.1
1,520,462	+				+0.7
1,520,463	-				-0.6
1,520,463	-				-0.3
1,520,463	-				-0.4
1,520,463	-				-0.3
1,520,463	-				-1.5
1,520,497	+				-0.5
1,520,497	+				-0.0
1,520,497	+				-0.3
1,520,498	-				-0.5
1,520,498	-				+0.0
1,520,538	+				-0.2
1,520,539	-				+0.7
1,520,575	+				-0.8
1,520,575	+				-0.0
1,520,575	+				-0.3
1,520,576	-				-0.3
1,520,576	-				-0.0
1,520,622	+				+0.2
1,520,622	+				-0.0
1,520,622	+				-0.1
1,520,622	+				+0.1
1,520,623	-				+0.5
1,520,623	-				-0.3
1,520,623	-				-0.2
1,520,623	-				-0.2
1,520,623	-				-0.6