Strain Fitness in Bosea sp. OAE506 around ABIE41_RS07390

Experiment: Ying_AminoAcid20 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS07375 and ABIE41_RS07380 are separated by 29 nucleotidesABIE41_RS07380 and ABIE41_RS07385 are separated by 274 nucleotidesABIE41_RS07385 and ABIE41_RS07390 are separated by 59 nucleotidesABIE41_RS07390 and ABIE41_RS07395 overlap by 17 nucleotidesABIE41_RS07395 and ABIE41_RS07400 are separated by 4 nucleotides ABIE41_RS07375: ABIE41_RS07375 - hypothetical protein, at 1,516,704 to 1,517,348 _RS07375 ABIE41_RS07380: ABIE41_RS07380 - hypothetical protein, at 1,517,378 to 1,517,608 _RS07380 ABIE41_RS07385: ABIE41_RS07385 - hypothetical protein, at 1,517,883 to 1,518,263 _RS07385 ABIE41_RS07390: ABIE41_RS07390 - helix-turn-helix transcriptional regulator, at 1,518,323 to 1,518,628 _RS07390 ABIE41_RS07395: ABIE41_RS07395 - hypothetical protein, at 1,518,612 to 1,519,307 _RS07395 ABIE41_RS07400: ABIE41_RS07400 - hypothetical protein, at 1,519,312 to 1,519,713 _RS07400 Position (kb) 1518 1519Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1517.570 kb on + strand, within ABIE41_RS07380at 1517.577 kb on + strand, within ABIE41_RS07380at 1517.711 kb on + strandat 1517.711 kb on + strandat 1517.711 kb on + strandat 1517.711 kb on + strandat 1517.711 kb on + strandat 1517.781 kb on + strandat 1517.950 kb on + strand, within ABIE41_RS07385at 1517.950 kb on + strand, within ABIE41_RS07385at 1517.995 kb on + strand, within ABIE41_RS07385at 1518.194 kb on - strand, within ABIE41_RS07385at 1518.194 kb on - strand, within ABIE41_RS07385at 1518.194 kb on - strand, within ABIE41_RS07385at 1518.595 kb on + strand, within ABIE41_RS07390at 1518.595 kb on + strand, within ABIE41_RS07390at 1518.604 kb on + strandat 1518.682 kb on + strand, within ABIE41_RS07395at 1518.682 kb on + strand, within ABIE41_RS07395at 1518.683 kb on - strand, within ABIE41_RS07395at 1518.724 kb on + strand, within ABIE41_RS07395at 1518.724 kb on + strand, within ABIE41_RS07395at 1518.724 kb on + strand, within ABIE41_RS07395at 1518.725 kb on - strand, within ABIE41_RS07395at 1518.727 kb on + strand, within ABIE41_RS07395at 1518.727 kb on + strand, within ABIE41_RS07395at 1518.727 kb on + strand, within ABIE41_RS07395at 1518.727 kb on + strand, within ABIE41_RS07395at 1518.728 kb on - strand, within ABIE41_RS07395at 1518.743 kb on + strand, within ABIE41_RS07395at 1518.887 kb on - strand, within ABIE41_RS07395at 1518.887 kb on - strand, within ABIE41_RS07395at 1518.887 kb on - strand, within ABIE41_RS07395at 1518.969 kb on + strand, within ABIE41_RS07395at 1518.970 kb on - strand, within ABIE41_RS07395at 1518.970 kb on - strand, within ABIE41_RS07395at 1518.992 kb on + strand, within ABIE41_RS07395at 1518.992 kb on + strand, within ABIE41_RS07395at 1518.992 kb on + strand, within ABIE41_RS07395at 1518.992 kb on + strand, within ABIE41_RS07395at 1518.992 kb on + strand, within ABIE41_RS07395at 1518.992 kb on + strand, within ABIE41_RS07395at 1518.993 kb on - strand, within ABIE41_RS07395at 1518.993 kb on - strand, within ABIE41_RS07395at 1518.993 kb on - strand, within ABIE41_RS07395at 1518.993 kb on - strand, within ABIE41_RS07395at 1518.993 kb on - strand, within ABIE41_RS07395at 1518.996 kb on + strand, within ABIE41_RS07395at 1518.996 kb on + strand, within ABIE41_RS07395at 1518.996 kb on + strand, within ABIE41_RS07395at 1518.996 kb on + strand, within ABIE41_RS07395at 1518.996 kb on + strand, within ABIE41_RS07395at 1518.997 kb on - strand, within ABIE41_RS07395at 1518.997 kb on - strand, within ABIE41_RS07395at 1518.997 kb on - strand, within ABIE41_RS07395at 1518.997 kb on - strand, within ABIE41_RS07395at 1518.997 kb on - strand, within ABIE41_RS07395at 1518.998 kb on + strand, within ABIE41_RS07395at 1518.998 kb on + strand, within ABIE41_RS07395at 1518.998 kb on + strand, within ABIE41_RS07395at 1518.999 kb on - strand, within ABIE41_RS07395at 1518.999 kb on - strand, within ABIE41_RS07395at 1519.043 kb on + strand, within ABIE41_RS07395at 1519.065 kb on + strand, within ABIE41_RS07395at 1519.066 kb on - strand, within ABIE41_RS07395at 1519.066 kb on - strand, within ABIE41_RS07395at 1519.066 kb on - strand, within ABIE41_RS07395at 1519.066 kb on - strand, within ABIE41_RS07395at 1519.066 kb on - strand, within ABIE41_RS07395at 1519.088 kb on + strand, within ABIE41_RS07395at 1519.088 kb on + strand, within ABIE41_RS07395at 1519.088 kb on + strand, within ABIE41_RS07395at 1519.089 kb on - strand, within ABIE41_RS07395at 1519.092 kb on + strand, within ABIE41_RS07395at 1519.092 kb on + strand, within ABIE41_RS07395at 1519.092 kb on + strand, within ABIE41_RS07395at 1519.092 kb on + strand, within ABIE41_RS07395at 1519.092 kb on + strand, within ABIE41_RS07395at 1519.092 kb on + strand, within ABIE41_RS07395at 1519.092 kb on + strand, within ABIE41_RS07395at 1519.093 kb on - strand, within ABIE41_RS07395at 1519.093 kb on - strand, within ABIE41_RS07395at 1519.201 kb on + strand, within ABIE41_RS07395at 1519.201 kb on + strand, within ABIE41_RS07395at 1519.201 kb on + strand, within ABIE41_RS07395at 1519.201 kb on + strand, within ABIE41_RS07395at 1519.202 kb on - strand, within ABIE41_RS07395at 1519.305 kb on + strandat 1519.305 kb on + strandat 1519.306 kb on - strandat 1519.306 kb on - strandat 1519.353 kb on + strand, within ABIE41_RS07400at 1519.354 kb on - strand, within ABIE41_RS07400at 1519.355 kb on + strand, within ABIE41_RS07400at 1519.369 kb on - strand, within ABIE41_RS07400at 1519.453 kb on + strand, within ABIE41_RS07400at 1519.454 kb on - strand, within ABIE41_RS07400at 1519.469 kb on - strand, within ABIE41_RS07400at 1519.469 kb on - strand, within ABIE41_RS07400at 1519.469 kb on - strand, within ABIE41_RS07400at 1519.500 kb on + strand, within ABIE41_RS07400at 1519.500 kb on + strand, within ABIE41_RS07400at 1519.500 kb on + strand, within ABIE41_RS07400at 1519.500 kb on + strand, within ABIE41_RS07400at 1519.501 kb on - strand, within ABIE41_RS07400at 1519.501 kb on - strand, within ABIE41_RS07400at 1519.534 kb on + strand, within ABIE41_RS07400at 1519.534 kb on + strand, within ABIE41_RS07400at 1519.535 kb on - strand, within ABIE41_RS07400at 1519.578 kb on - strand, within ABIE41_RS07400at 1519.578 kb on - strand, within ABIE41_RS07400at 1519.608 kb on + strand, within ABIE41_RS07400at 1519.608 kb on + strand, within ABIE41_RS07400at 1519.608 kb on + strand, within ABIE41_RS07400at 1519.609 kb on - strand, within ABIE41_RS07400at 1519.609 kb on - strand, within ABIE41_RS07400

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 2
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1,517,570 + ABIE41_RS07380 0.83 +1.2
1,517,577 + ABIE41_RS07380 0.86 +0.5
1,517,711 + -0.1
1,517,711 + -1.3
1,517,711 + +0.4
1,517,711 + +0.1
1,517,711 + -0.1
1,517,781 + +0.1
1,517,950 + ABIE41_RS07385 0.18 -0.2
1,517,950 + ABIE41_RS07385 0.18 -3.1
1,517,995 + ABIE41_RS07385 0.29 -0.2
1,518,194 - ABIE41_RS07385 0.82 -1.9
1,518,194 - ABIE41_RS07385 0.82 +0.2
1,518,194 - ABIE41_RS07385 0.82 -0.2
1,518,595 + ABIE41_RS07390 0.89 +0.3
1,518,595 + ABIE41_RS07390 0.89 +0.0
1,518,604 + +0.6
1,518,682 + ABIE41_RS07395 0.10 +1.4
1,518,682 + ABIE41_RS07395 0.10 +0.4
1,518,683 - ABIE41_RS07395 0.10 -1.1
1,518,724 + ABIE41_RS07395 0.16 -0.6
1,518,724 + ABIE41_RS07395 0.16 +0.8
1,518,724 + ABIE41_RS07395 0.16 -0.4
1,518,725 - ABIE41_RS07395 0.16 +1.3
1,518,727 + ABIE41_RS07395 0.17 +0.3
1,518,727 + ABIE41_RS07395 0.17 +0.9
1,518,727 + ABIE41_RS07395 0.17 +0.1
1,518,727 + ABIE41_RS07395 0.17 -0.5
1,518,728 - ABIE41_RS07395 0.17 +0.4
1,518,743 + ABIE41_RS07395 0.19 -0.0
1,518,887 - ABIE41_RS07395 0.40 -0.3
1,518,887 - ABIE41_RS07395 0.40 -0.4
1,518,887 - ABIE41_RS07395 0.40 -0.9
1,518,969 + ABIE41_RS07395 0.51 +0.0
1,518,970 - ABIE41_RS07395 0.51 -0.2
1,518,970 - ABIE41_RS07395 0.51 -0.4
1,518,992 + ABIE41_RS07395 0.55 -0.8
1,518,992 + ABIE41_RS07395 0.55 +0.0
1,518,992 + ABIE41_RS07395 0.55 -0.0
1,518,992 + ABIE41_RS07395 0.55 +1.7
1,518,992 + ABIE41_RS07395 0.55 -0.1
1,518,992 + ABIE41_RS07395 0.55 -0.0
1,518,993 - ABIE41_RS07395 0.55 +0.2
1,518,993 - ABIE41_RS07395 0.55 -0.5
1,518,993 - ABIE41_RS07395 0.55 +0.1
1,518,993 - ABIE41_RS07395 0.55 -0.7
1,518,993 - ABIE41_RS07395 0.55 -0.6
1,518,996 + ABIE41_RS07395 0.55 -0.4
1,518,996 + ABIE41_RS07395 0.55 +3.0
1,518,996 + ABIE41_RS07395 0.55 +0.8
1,518,996 + ABIE41_RS07395 0.55 -0.8
1,518,996 + ABIE41_RS07395 0.55 +1.7
1,518,997 - ABIE41_RS07395 0.55 +0.3
1,518,997 - ABIE41_RS07395 0.55 -0.3
1,518,997 - ABIE41_RS07395 0.55 +0.2
1,518,997 - ABIE41_RS07395 0.55 +0.2
1,518,997 - ABIE41_RS07395 0.55 +0.3
1,518,998 + ABIE41_RS07395 0.55 -1.8
1,518,998 + ABIE41_RS07395 0.55 -0.2
1,518,998 + ABIE41_RS07395 0.55 -0.9
1,518,999 - ABIE41_RS07395 0.56 +0.1
1,518,999 - ABIE41_RS07395 0.56 -1.3
1,519,043 + ABIE41_RS07395 0.62 -0.4
1,519,065 + ABIE41_RS07395 0.65 +0.5
1,519,066 - ABIE41_RS07395 0.65 +0.1
1,519,066 - ABIE41_RS07395 0.65 +0.1
1,519,066 - ABIE41_RS07395 0.65 -0.1
1,519,066 - ABIE41_RS07395 0.65 +0.1
1,519,066 - ABIE41_RS07395 0.65 +1.7
1,519,088 + ABIE41_RS07395 0.68 +1.7
1,519,088 + ABIE41_RS07395 0.68 -0.5
1,519,088 + ABIE41_RS07395 0.68 +0.1
1,519,089 - ABIE41_RS07395 0.69 +1.2
1,519,092 + ABIE41_RS07395 0.69 -0.5
1,519,092 + ABIE41_RS07395 0.69 -0.0
1,519,092 + ABIE41_RS07395 0.69 +0.4
1,519,092 + ABIE41_RS07395 0.69 -0.3
1,519,092 + ABIE41_RS07395 0.69 -0.2
1,519,092 + ABIE41_RS07395 0.69 +0.4
1,519,092 + ABIE41_RS07395 0.69 +0.7
1,519,093 - ABIE41_RS07395 0.69 +1.1
1,519,093 - ABIE41_RS07395 0.69 +0.3
1,519,201 + ABIE41_RS07395 0.85 -0.1
1,519,201 + ABIE41_RS07395 0.85 +0.0
1,519,201 + ABIE41_RS07395 0.85 -0.0
1,519,201 + ABIE41_RS07395 0.85 +0.2
1,519,202 - ABIE41_RS07395 0.85 +0.5
1,519,305 + -0.4
1,519,305 + +0.2
1,519,306 - -0.1
1,519,306 - -0.3
1,519,353 + ABIE41_RS07400 0.10 -0.1
1,519,354 - ABIE41_RS07400 0.10 -0.6
1,519,355 + ABIE41_RS07400 0.11 -0.2
1,519,369 - ABIE41_RS07400 0.14 -0.2
1,519,453 + ABIE41_RS07400 0.35 -0.8
1,519,454 - ABIE41_RS07400 0.35 +0.6
1,519,469 - ABIE41_RS07400 0.39 +0.8
1,519,469 - ABIE41_RS07400 0.39 -1.3
1,519,469 - ABIE41_RS07400 0.39 -3.3
1,519,500 + ABIE41_RS07400 0.47 +0.2
1,519,500 + ABIE41_RS07400 0.47 -0.3
1,519,500 + ABIE41_RS07400 0.47 +0.4
1,519,500 + ABIE41_RS07400 0.47 +0.7
1,519,501 - ABIE41_RS07400 0.47 -0.1
1,519,501 - ABIE41_RS07400 0.47 +1.0
1,519,534 + ABIE41_RS07400 0.55 +1.2
1,519,534 + ABIE41_RS07400 0.55 -0.3
1,519,535 - ABIE41_RS07400 0.55 +0.2
1,519,578 - ABIE41_RS07400 0.66 -0.4
1,519,578 - ABIE41_RS07400 0.66 +1.7
1,519,608 + ABIE41_RS07400 0.74 -3.0
1,519,608 + ABIE41_RS07400 0.74 -0.3
1,519,608 + ABIE41_RS07400 0.74 -0.1
1,519,609 - ABIE41_RS07400 0.74 -0.2
1,519,609 - ABIE41_RS07400 0.74 -0.3

Or see this region's nucleotide sequence